Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_031038.1
Length=222832
Score E
Sequences producing significant alignments: (Bits) Value
seq2 664 0.0
seq4 255 8e-63
>seq2
Length=27840087
Score = 664 bits (736), Expect = 0.0
Identities = 1269/1849 (69%), Gaps = 24/1849 (1%)
Strand=Plus/Minus
Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457
||||||||||| || ||||| ||||| || || || |||||| ||||| || |||
Sbjct 27785281 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 27785222
Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517
|| || |||| ||| |||| | || || |||| ||||||||| | |||||||||
Sbjct 27785221 TGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 27785162
Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATTT 75575
||||| || || ||||||||||||||||||||||||||| | | ||||| | |||||
Sbjct 27785161 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGA--TTTGACTGAAATTT 27785104
Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGG 75632
|||| | |||||| | | | || || | |||| |||| ||||||| || |
Sbjct 27785103 CCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTG 27785044
Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692
| || | | ||||| ||| ||| || ||||| |||| |||||| | || ||||
Sbjct 27785043 AACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTA 27784984
Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752
|| | | || | || | || || | |||||||| |||||||| |||| || ||||
Sbjct 27784983 AATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGT 27784924
Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812
|||| || ||||| || || | || ||||| || ||||| ||||| ||||| || |
Sbjct 27784923 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATG 27784864
Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT-ATCT 75871
| || ||||| || || | | |||| |||||||| ||| ||||| | | | || |
Sbjct 27784863 CTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC--GTGTTGCGCTATAGATTT 27784806
Query 75872 TTTA-GATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAG 75930
|||| || ||||||||||||||||||| |||| | ||| | ||| || || |
Sbjct 27784805 TTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAA 27784746
Query 75931 AATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAG 75990
|||||| ||||| | ||| ||| || || || | || || | | |||||
Sbjct 27784745 AATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAA 27784686
Query 75991 TTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC 76050
||| || || || || || || || || || || ||||||||||||| || ||| |
Sbjct 27784685 TTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAA 27784626
Query 76051 TTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTG 76110
|||||| |||| || | | ||| | | | || ||||| || || | || ||
Sbjct 27784625 AAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTG 27784566
Query 76111 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTA 76170
||||||||||||||||| | || | ||| || ||| ||||||||| | ||||||
Sbjct 27784565 GACTCCAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTA 27784506
Query 76171 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAG 76230
||||| ||||| || |||||||| | ||| | ||| | |||| || || || ||
Sbjct 27784505 GTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAG 27784446
Query 76231 TTTGAGAAAATCAAAT--TTTC-CATCTATCACAAACATATTAAGAGCTATAGATGCTAG 76287
|| ||| ||| | |||| | | |||||||||||||||| || ||||| || |
Sbjct 27784445 CTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAA 27784386
Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347
|||||| || |||| |||| | | ||||| | ||| || ||||| ||||||||
Sbjct 27784385 ATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACT 27784326
Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407
|| || |||||||||| ||||||||||||||| ||| ||||||| ||||||||| ||
Sbjct 27784325 GCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTA--AAT 27784268
Query 76408 AACAA--ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 76465
|||| | ||||| ||||| || | || ||||| || || | ||| | | |
Sbjct 27784267 AACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAAGAGATTGA 27784208
Query 76466 GCTTTTATTA-TAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAA 76524
|| || || | | |||| | ||| ||||| |||||||| |||| | ||||||
Sbjct 27784207 GCCTTAATAACTCGATTCGC-TCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAA 27784149
Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584
|| || ||||||||||| | ||||| |||| || |||||||| |||||||| ||
Sbjct 27784148 ATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAGTC 27784089
Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644
||| | | ||| ||||||||||| |||||||||||||| | |||| ||| |||||
Sbjct 27784088 TTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGATC 27784029
Query 76645 TCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATC 76704
|| | | | | || || ||||| ||||| |||||||| || | || || | | |||
Sbjct 27784028 GCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATC 27783969
Query 76705 AGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764
|| ||||| || || | |||||| || | | || |||| |||| ||| ||||||||
Sbjct 27783968 TGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATC 27783909
Query 76765 TATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTAGATGTAC 76823
| ||| | || |||||| | ||||| |||||||| | |||| || || || || |
Sbjct 27783908 AACATAACGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTGC 27783850
Query 76824 CATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTC 76883
| || |||||| |||| | | || || |||||| || | || || || |
Sbjct 27783849 CGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATGC 27783790
Query 76884 CTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATAC 76943
| |||||| || || || | || || ||| | || | | | || || || ||
Sbjct 27783789 CACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTG 27783730
Query 76944 TATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002
|||| || || ||||| ||||||||| ||||| ||| || || || |||||
Sbjct 27783729 AATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCA 27783671
Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062
||| | || || ||||||||||| || | ||||| || | |||||| ||||||
Sbjct 27783670 GCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCA 27783611
Query 77063 ATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122
| | | || ||||| ||| || |||| ||||||||||| | || ||||||
Sbjct 27783610 ACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCTGT 27783551
Query 77123 GGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 77182
|||| |||| | | || ||||||||| | ||| || || || | || || ||
Sbjct 27783550 GGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGAAT 27783491
Query 77183 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231
||||| ||||| ||| || || | || || |||||| | || ||||
Sbjct 27783490 CCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTTTA 27783442
Score = 102 bits (112), Expect = 1e-16
Identities = 124/169 (73%), Gaps = 0/169 (0%)
Strand=Plus/Minus
Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400
||||| |||||| ||||| || || ||||| || || || ||||| || || |||| ||
Sbjct 27782619 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 27782560
Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460
|||||| | ||| || || || | ||||||| ||||| || || || |||| |||||
Sbjct 27782559 ATAGTCCGCATGATGGGTTGTTAAACTGGCTGCAATTTCCGCGGCCAAGTTATCCAATTC 27782500
Query 77461 TATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 77509
| |||| || ||| || || || | ||||||||||| || ||||
Sbjct 27782499 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGGTTATT 27782451
>seq4
Length=23952536
Score = 255 bits (282), Expect = 8e-63
Identities = 571/844 (68%), Gaps = 25/844 (3%)
Strand=Plus/Plus
Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389
|| ||||| ||| ||||| || || ||||||||| || ||||| ||||| ||||
Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212
Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449
|| || | |||||||| || ||||| | ||| || ||||| || || | |
Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272
Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509
|| | ||| | ||| ||||| ||||| |||||| ||||| | ||||||||||
Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332
Query 46510 CCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC 46569
|| || | |||||| || ||||| || || ||||||||||| ||||| || ||||||||
Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392
Query 46570 GATATTATCGATGTTACTGTTTC-CTCA---CTTGGTGGATGCATCAAATGTTTAAACAT 46625
|| || ||| | | || | | |||| || || | |||| |||||| |||||
Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448
Query 46626 TA-AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATG 46684
| ||| ||||| |||||||| | ||| || || | || || || || || || |
Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507
Query 46685 TGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAA 46743
| || || ||||| || ||||| || || |||||||| || | || |||| | ||| |
Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGC-AAAGCTGCCACTA 3358566
Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT- 46802
||||| || || || || || ||||| || | | |||||| || | | || | ||
Sbjct 3358567 AAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTC 3358626
Query 46803 -ATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860
||| |||||| | |||||||| |||||| ||| ||| ||||||||||| ||
Sbjct 3358627 GATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATG 3358686
Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920
||||| || ||| | | ||| | ||| ||| ||||||||| || | | ||
Sbjct 3358687 GCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTG 3358746
Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980
||||| || || || | || || || || || ||||| || || ||||| | |||||
Sbjct 3358747 TACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCG 3358806
Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACT 47039
|| || || ||||| | || || || ||||| ||||||||| || || |||||
Sbjct 3358807 GTTATTTGCACCTCCTGGCTGAAGCGCTC-GACAAGATTCTCATTAACAATGCCATCGGA 3358865
Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA-- 47097
|| ||||| || || | ||||| ||||| | || || |||||| |
Sbjct 3358866 GGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTC----GTTATCAGTTAAAC 3358921
Query 47098 --TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155
|||||| | | ||||| || | ||| || ||||| | ||||||||||| ||||
Sbjct 3358922 GTGCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCT 3358981
Query 47156 CTGC 47159
| ||
Sbjct 3358982 CAGC 3358985
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 712906078680960
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