Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2 664 0.0 seq4 255 8e-63 >seq2 Length=27840087 Score = 664 bits (736), Expect = 0.0 Identities = 1269/1849 (69%), Gaps = 24/1849 (1%) Strand=Plus/Minus Query 75398 GCTGGTTTTGTACGTAGATAGTACATACCAGTTTTTAGACCCAGACTCCATCCGTAGAAA 75457 ||||||||||| || ||||| ||||| || || || |||||| ||||| || ||| Sbjct 27785281 GCTGGTTTTGTGCGAAGATAATACATGCCGGTCTTAAGACCCGCTTTCCATGAATAAAAA 27785222 Query 75458 TGCATGCTTGTTAGTTTGGAATAACTCGGATCGGCTATATGAATATTCATCGACTGACTT 75517 || || |||| ||| |||| | || || |||| ||||||||| | ||||||||| Sbjct 27785221 TGGATTGACGTTAATTTTCCATAATTGGGTTCAGCTACATGAATATTGAAAGACTGACTT 27785162 Query 75518 TGATCGATGAAAGCTCCTCTATCAGCCGCCATTTTTATAATGGTCTTTTGA--GGAATTT 75575 ||||| || || ||||||||||||||||||||||||||| | | ||||| | ||||| Sbjct 27785161 TGATCAATAAACGCTCCTCTATCAGCCGCCATTTTTATAGTTGA--TTTGACTGAAATTT 27785104 Query 75576 CCCAAATAGTTTTGAAAACTTGTTTGATATCATCTGGAA--GATTTG-TATTTTGAATGG 75632 |||| | |||||| | | | || || | |||| |||| ||||||| || | Sbjct 27785103 CCCACACAGTTTTATACAAATCACGAATTTCTTTAGGAATAGATTCAATATTTTGTATTG 27785044 Query 75633 ATCCGCCATCAGATATAATTGTATTCTTGATCTCATCATTCCACAATTTTCTCTCGGTTA 75692 | || | | ||||| ||| ||| || ||||| |||| |||||| | || |||| Sbjct 27785043 AACCACGACTTGATATTATTTGATTTTTCATCTCGTCATCCCACAAATCAAGTTCAGTTA 27784984 Query 75693 AAACTCTAAGGAGATGAGGATTAACAATTTGAAATTCTCCAGACAATACTCTTCGAGTGT 75752 || | | || | || | || || | |||||||| |||||||| |||| || |||| Sbjct 27784983 AATCACGTAGTAAGTGGTGGTTCACTACCTGAAATTCGCCAGACAAAACTCGTCTTGTGT 27784924 Query 75753 AAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCAGTTGAAG 75812 |||| || ||||| || || | || ||||| || ||||| ||||| ||||| || | Sbjct 27784923 AAATGTTTGAAGTATAAGGCTCGAACGACTCATTATTGCCCAATATTTGCGCAGTGGATG 27784864 Query 75813 CAGTCGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATTTT-ATCT 75871 | || ||||| || || | | |||| |||||||| ||| ||||| | | | || | Sbjct 27784863 CTGTAGGCATGGGAGCGATGAGTAAAGAATTTCTGACACC--GTGTTGCGCTATAGATTT 27784806 Query 75872 TTTA-GATATTTCCAATCCCAAAGATCTGATGGTACAACATCCCAGAGATCGTATTGTAG 75930 |||| || ||||||||||||||||||| |||| | ||| | ||| || || | Sbjct 27784805 TTTAAGAGCATTCCAATCCCAAAGATCTGTTGGTGATTTTTTCCACATATCATACTGCAA 27784746 Query 75931 AATTCCGTTGCTAGCATATGATCCATTATATGTTTCGTAAGTCCCGTCCTTTTCAGCTAG 75990 |||||| ||||| | ||| ||| || || || | || || | | ||||| Sbjct 27784745 AATTCCTTTGCTTACTGGACTGCCAACATAAGTCTCATATGGTCCATCTCTCTGAGCTAA 27784686 Query 75991 TTCGCAACTCGCCTCTAACGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTAAGATC 76050 ||| || || || || || || || || || || ||||||||||||| || ||| | Sbjct 27784685 TTCACAGCTGGCTTCCAAAGCTCCATAGTATATAGTTTCGAAAATCTGCTGATTTAATAA 27784626 Query 76051 TTGCGCTTCAAGACTATCAAAAGGATAATGTAAAAGAATAAATGCATCTGCTAGTCCCTG 76110 |||||| |||| || | | ||| | | | || ||||| || || | || || Sbjct 27784625 AAATGCTTCACGACTTTCGTAGGAATACCGCATTAATATTAATGCGTCCGCAAACCCTTG 27784566 Query 76111 AACTCCAATACCAATAGGTCTATGTCTCTTATTGGAAATTTCAGCTTCTGGAATAGGGTA 76170 ||||||||||||||||| | || | ||| || ||| ||||||||| | |||||| Sbjct 27784565 GACTCCAATACCAATAGGACGGTGACGTAAATTTGATTTTTTAGCTTCTGGCAAAGGGTA 27784506 Query 76171 ATAATTAATATCTATAATTTTATTGAGATTTCTGACAACTACTTTAACCACGTCCTTTAG 76230 ||||| ||||| || |||||||| | ||| | ||| | |||| || || || || Sbjct 27784505 GTAATTTATATCAATTATTTTATTTAAGTTTTTCGTAACGATTTTAGTTACTTCTTTAAG 27784446 Query 76231 TTTGAGAAAATCAAAT--TTTC-CATCTATCACAAACATATTAAGAGCTATAGATGCTAG 76287 || ||| ||| | |||| | | |||||||||||||||| || ||||| || | Sbjct 27784445 CTTTTTAAAGTCATAAGATTTCTCCTGCGTCACAAACATATTAAGTGCGATAGACGCCAA 27784386 Query 76288 ATTACAAACGGCTACCTCATTAGCATTGGCATATTGTATTATCTCCGTGCATAGATTACT 76347 |||||| || |||| |||| | | ||||| | ||| || ||||| |||||||| Sbjct 27784385 ATTACACACAGCTATTTCATCTGGTGCCGAATATTCAACTATTTCTGTGCACAGATTACT 27784326 Query 76348 ACACTTGATAGTTCCAAGATTTTGTTGGTTGCTCTTTTTGTTACATGAGTCCTTATAAAG 76407 || || |||||||||| ||||||||||||||| ||| ||||||| ||||||||| || Sbjct 27784325 GCATTTTATAGTTCCAACATTTTGTTGGTTGCTTTTTCTGTTACAAGAGTCCTTA--AAT 27784268 Query 76408 AACAA--ACGGAGTTCCAGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTA 76465 |||| | ||||| ||||| || | || ||||| || || | ||| | | | Sbjct 27784267 AACATGTAAGGAGTACCAGTCTCTACTTGAGATTCAATGATGGCAAACCAAAGAGATTGA 27784208 Query 76466 GCTTTTATTA-TAGATTTGTATCGCTTCTCTCTTTCATATTGTGTATATAACCGTTCAAA 76524 || || || | | |||| | ||| ||||| |||||||| |||| | |||||| Sbjct 27784207 GCCTTAATAACTCGATTCGC-TCGTCCCTCTCGTTCATATTTGATATAGAGGTTTTCAAA 27784149 Query 76525 TTCATCTCCCCAAACATCATCCAAACCAGGACATTCATTCGGACACATCAATGACCACTC 76584 || || ||||||||||| | ||||| |||| || |||||||| |||||||| || Sbjct 27784148 ATCTTCACCCCAAACATCTGGGAGGCCAGGGCATTTATGTGGACACATTAATGACCAGTC 27784089 Query 76585 ACCATCTTCCTTAACCCGTTTCATAAAGAGATCAGGTATCCATAGAGCAATAAATAGATC 76644 ||| | | ||| ||||||||||| |||||||||||||| | |||| ||| ||||| Sbjct 27784088 TTCATTAGCTTCAACACGTTTCATAAAAAGATCAGGTATCCACAATGCAAAAAAAAGATC 27784029 Query 76645 TCGGGTTCTACGTTCTTCATTTCCTGTATTCTTTTTAAGATCTAGGAACTCCATAATATC 76704 || | | | | || || ||||| ||||| |||||||| || | || || | | ||| Sbjct 27784028 GCGTGCACGATGCTCCTCCTTTCCAGTATTTTTTTTAAGGTCCAAAAATTCGAAGACATC 27783969 Query 76705 AGAATGCCATGGTTCTAGATATATCGCCATAACACCCGGTCGTTTATTACCTCCCTGATC 76764 || ||||| || || | |||||| || | | || |||| |||| ||| |||||||| Sbjct 27783968 TGAGTGCCAAGGCTCCAAATATATAGCAAATGCTCCAGGTCTTTTACCACCGCCCTGATC 27783909 Query 76765 TATATATCTGGCAGTGTTATTATAAACTCTCAACATTGG-AATAATGCCGTTAGATGTAC 76823 | ||| | || |||||| | ||||| |||||||| | |||| || || || || | Sbjct 27783908 AACATAACGCGCGACATTATTAAATACTCTTAACATTGGTACTAAT-CCATTTGAAGTGC 27783850 Query 76824 CATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGATAGGCCTATTC 76883 | || |||||| |||| | | || || |||||| || | || || || | Sbjct 27783849 CGTTCGTTCCACAAATTGAGGTGCCTTTAGCTCGAATACAGTGAACATTAAGTCCAATGC 27783790 Query 76884 CTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGATGCCCTCTATAC 76943 | |||||| || || || | || || ||| | || | | | || || || || Sbjct 27783789 CACCTGCCGACTTTGATATCATTGCGCATTGTTCAACTGATTTAAAAATCCCTTCAATTG 27783730 Query 76944 TATCATCCATCAT-GTTAAGAAGAAAACAGCTAGACATTTGATGATGAACAGTTCCTGCA 77002 |||| || || ||||| ||||||||| ||||| ||| || || || ||||| Sbjct 27783729 AATCAGACACTATAGTTAA-AAGAAAACATGAAGACAATTGTGGACGATTTGTGGCTGCA 27783671 Query 77003 TTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTGTATGTTTCA 77062 ||| | || || ||||||||||| || | ||||| || | |||||| |||||| Sbjct 27783670 GCAAAAAGAGTTGGTGATGCATGAGTAAAAAAACGCTCAGATAGCAAATTGTAGGTTTCA 27783611 Query 77063 ATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAACATATGCTGA 77122 | | | || ||||| ||| || |||| ||||||||||| | || |||||| Sbjct 27783610 ACTGCAGAATCAATATCTTCGCCATGTATACCTATGGCGACACGCATTAGCAAATGCTGT 27783551 Query 77123 GGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAA 77182 |||| |||| | | || ||||||||| | ||| || || || | || || || Sbjct 27783550 GGTCTTTCTGCTATTTTTCCATTTATTTTTAGCAAATACGACCGCTCAAGTGTCTTGAAT 27783491 Query 77183 CCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAATAACCGAATTTA 77231 ||||| ||||| ||| || || | || || |||||| | || |||| Sbjct 27783490 CCAAAGTAGTTATATCCGAAATCGCGATCATATATAATAGCAGAGTTTA 27783442 Score = 102 bits (112), Expect = 1e-16 Identities = 124/169 (73%), Gaps = 0/169 (0%) Strand=Plus/Minus Query 77341 AAATAGtttttttGTTTCCTTGTGTAGATTCGATACGGCTATTCTAGCAGCTAGAATTGC 77400 ||||| |||||| ||||| || || ||||| || || || ||||| || || |||| || Sbjct 27782619 AAATACTTTTTTAGTTTCTTTATGAAGATTGGAAACTGCGATTCTTGCCGCCAGAAGAGC 27782560 Query 77401 ATAGTCAGGATGTTGTGTAGTGCAGGTGGCTGCTATTTCTGCCGCTAAAGTATCTAATTC 77460 |||||| | ||| || || || | ||||||| ||||| || || || |||| ||||| Sbjct 27782559 ATAGTCCGCATGATGGGTTGTTAAACTGGCTGCAATTTCCGCGGCCAAGTTATCCAATTC 27782500 Query 77461 TATAGTAGTAACTCCGTTATATAGCCCTTGAATAACTTTCATGGCTATT 77509 | |||| || ||| || || || | ||||||||||| || |||| Sbjct 27782499 TTGTGTAGACACACCGCAGTAGAGTCCATTAATAACTTTCAGGGTTATT 27782451 >seq4 Length=23952536 Score = 255 bits (282), Expect = 8e-63 Identities = 571/844 (68%), Gaps = 25/844 (3%) Strand=Plus/Plus Query 46330 ACTCCCATTTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAAT 46389 || ||||| ||| ||||| || || ||||||||| || ||||| ||||| |||| Sbjct 3358153 ACGCCCATACGTTGATATTCGCCAACTTTTTTCTCGAAGAAGTTAGTCTTGCCATCCAGC 3358212 Query 46390 GATATATTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAAT 46449 || || | |||||||| || ||||| | ||| || ||||| || || | | Sbjct 3358213 GAGATCATCTCCATAAAGGTGAATGGATTCTTCGTATTGTAGATTTTGCCAACACCGAGT 3358272 Query 46450 TCTGAAATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATT 46509 || | ||| | ||| ||||| ||||| |||||| ||||| | |||||||||| Sbjct 3358273 TCCACCAACAGACGATCCGCAACAAATTCAATATACTCGGACATCAATGCACAATTCATG 3358332 Query 46510 CCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCC 46569 || || | |||||| || ||||| || || ||||||||||| ||||| || |||||||| Sbjct 3358333 CCAATCAATTTGACGGGCAGAGCATCTGTGAGAAACTCTTGCTCAATGGTAACAGCATCA 3358392 Query 46570 GATATTATCGATGTTACTGTTTC-CTCA---CTTGGTGGATGCATCAAATGTTTAAACAT 46625 || || ||| | | || | | |||| || || | |||| |||||| ||||| Sbjct 3358393 GAGAT----GATCTCAATGATGCGCTCACGGCTAGGACGTTGCACCAAATGCCGGAACAT 3358448 Query 46626 TA-AACATGCAAAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATG 46684 | ||| ||||| |||||||| | ||| || || | || || || || || || | Sbjct 3358449 CATCACA-GCAAAGTCACAATGCAAGCCCTCGTCGCGTGAGATCAACTCATTGGAGAAGG 3358507 Query 46685 TGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGAT-CCAGAA 46743 | || || ||||| || ||||| || || |||||||| || | || |||| | ||| | Sbjct 3358508 TCAGACCGGGCATCAGACCACGTTTCTTCAGCCAAAAGATCGAGGC-AAAGCTGCCACTA 3358566 Query 46744 AAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATT- 46802 ||||| || || || || || ||||| || | | |||||| || | | || | || Sbjct 3358567 AAGAAGATTCCCTCCACGGCAGCGAACGCAATGATTCTCTCGCCAAAGTTCGCCGCCTTC 3358626 Query 46803 -ATG-AATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATA 46860 ||| |||||| | |||||||| |||||| ||| ||| ||||||||||| || Sbjct 3358627 GATGAAATCCAAGAGAGCGCCCAATCGGCCTTTCGCTTGACAGCGGGCATTGTTTCAATG 3358686 Query 46861 GCATTAAAGAGAAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTA 46920 ||||| || ||| | | ||| | ||| ||| ||||||||| || | | || Sbjct 3358687 GCATTGAACAGATAATCCCGTTCCTGTGGATCCCTAATATATGTATCGATCAGCACGCTG 3358746 Query 46921 TACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCA 46980 ||||| || || || | || || || || || ||||| || || ||||| | ||||| Sbjct 3358747 TACATCTCCGAGTGCACATTCTCCATGGCGATTTGAAAGCCATAGAAACAACGAGCTTCG 3358806 Query 46981 GTAATCTGTACCTCTGTACAAAATCGTTCAGACAA-ATTCTCATTCACTATTCCATCACT 47039 || || || ||||| | || || || ||||| ||||||||| || || ||||| Sbjct 3358807 GTTATTTGCACCTCCTGGCTGAAGCGCTC-GACAAGATTCTCATTAACAATGCCATCGGA 3358865 Query 47040 AGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTA-- 47097 || ||||| || || | ||||| ||||| | || || |||||| | Sbjct 3358866 GGCGGCAAAGAAGGCGAGCACATGGGAGATAAAGTGACGCTC----GTTATCAGTTAAAC 3358921 Query 47098 --TTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCT 47155 |||||| | | ||||| || | ||| || ||||| | ||||||||||| |||| Sbjct 3358922 GTGCCCAGTCGGTCAAGTCTTTAGAGAGATCCACCTCTTCCACAGTCCAGAATGAGGCCT 3358981 Query 47156 CTGC 47159 | || Sbjct 3358982 CAGC 3358985 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712906078680960