Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09] 3,178 sequences; 141,386,800 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq2 154 4e-32 seq3 123 6e-23 >seq2 Length=27840087 Score = 154 bits (170), Expect = 4e-32 Identities = 158/205 (77%), Gaps = 1/205 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || ||||| || || || || || ||||| || ||||| ||| || || Sbjct 14207669 CAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 14207610 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||||||||| |||||| ||||| ||||||||||||||||| ||||| || ||||| Sbjct 14207609 ACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 14207550 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||| || || || || | |||||||| | |||||| |||| || ||| || Sbjct 14207549 CGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAACATC 14207490 Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128 |||||||| ||||| |||| |||| Sbjct 14207489 CAAAAAGAGTCAACCTTGCA-CTTG 14207466 Score = 150 bits (166), Expect = 4e-31 Identities = 163/214 (76%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| |||| ||||| ||||||||||| || || || || || | ||||| || Sbjct 185368 AAAATGC---AAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAG 185424 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 ||| |||||||||||||| ||||| ||||| || |||||||| |||||||| || Sbjct 185425 CCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCA 185484 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094 || ||||| || || ||||||||||| || ||||| || |||||| | ||||| |||| Sbjct 185485 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGAC 185544 Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128 || ||| | || || || || || |||| |||| Sbjct 185545 TACAACATTCAGAAGGAGTCCACTTTGCA-CTTG 185577 >seq3 Length=22052390 Score = 123 bits (136), Expect = 6e-23 Identities = 159/216 (74%), Gaps = 5/216 (2%) Strand=Plus/Plus Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974 ||||||| | || ||||| |||||| | || ||||| || |||||| | ||||| || Sbjct 1974942 AAAATGC---AGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAG 1974998 Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034 || || ||||| ||||||||||| |||||||| || || || ||||| || || Sbjct 1974999 CCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCA 1975058 Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093 || ||||| || || ||||||||||| || || || |||||||| | || |||| | || Sbjct 1975059 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCAC-CTTGTCTGA 1975117 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129 || || |||| || || || || || ||||| || Sbjct 1975118 CTACAATATCCAGAAGGAGTCGACCCTTCATCTGGT 1975153 Score = 95.1 bits (104), Expect = 3e-14 Identities = 93/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 |||||||||||||| ||||| || || || || ||||| || || ||||||||||| || Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 || || |||||||| | || || ||||||| ||| | ||||| || || || || ||| Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203682186322532