Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq2 154 4e-32
seq3 123 6e-23
>seq2
Length=27840087
Score = 154 bits (170), Expect = 4e-32
Identities = 158/205 (77%), Gaps = 1/205 (0%)
Strand=Plus/Minus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || || || ||||| || || || || || ||||| || ||||| ||| || ||
Sbjct 14207669 CAGATCTTTGTTAAAACCCTAACGGGTAAGACCATCACTCTTGAGGTCGAACCGTCGGAT 14207610
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
||||||||||| |||||| ||||| ||||||||||||||||| ||||| || |||||
Sbjct 14207609 ACCATCGAGAATGTCAAAGCCAAGATCCAGGACAAAGAAGGAATTCCTCCAGATCAGCAG 14207550
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|| || ||||| || || || || | |||||||| | |||||| |||| || ||| ||
Sbjct 14207549 CGTCTAATCTTTGCTGGCAAGCAATTGGAAGATGGTCGCACTCTTTCCGACTACAACATC 14207490
Query 178104 CAAAAAGAATCAACACTGCATCTTG 178128
|||||||| ||||| |||| ||||
Sbjct 14207489 CAAAAAGAGTCAACCTTGCA-CTTG 14207466
Score = 150 bits (166), Expect = 4e-31
Identities = 163/214 (76%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| |||| ||||| ||||||||||| || || || || || | ||||| ||
Sbjct 185368 AAAATGC---AAATCTTCGTTAAAACTCTCACCGGCAAGACCATTACTTTGGAGGTCGAG 185424
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
||| |||||||||||||| ||||| ||||| || |||||||| |||||||| ||
Sbjct 185425 CCCTCTGACACCATCGAGAATGTCAAGGCCAAGATCCAAGACAAAGAGGGAATCCCACCA 185484
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGAT 178094
|| ||||| || || ||||||||||| || ||||| || |||||| | ||||| ||||
Sbjct 185485 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACTCTGTCCGAC 185544
Query 178095 TATAACGTCCAAAAAGAATCAACACTGCATCTTG 178128
|| ||| | || || || || || |||| ||||
Sbjct 185545 TACAACATTCAGAAGGAGTCCACTTTGCA-CTTG 185577
>seq3
Length=22052390
Score = 123 bits (136), Expect = 6e-23
Identities = 159/216 (74%), Gaps = 5/216 (2%)
Strand=Plus/Plus
Query 177915 AAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAA 177974
||||||| | || ||||| |||||| | || ||||| || |||||| | ||||| ||
Sbjct 1974942 AAAATGC---AGATCTTCGTTAAAACTTTGACGGGAAAGACCATCACCTTGGAGGTTGAG 1974998
Query 177975 AGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCG 178034
|| || ||||| ||||||||||| |||||||| || || || ||||| || ||
Sbjct 1974999 CCTTCCGATACCATTGAGAACGTCAAGGCCAAGATTCAAGATAAGGAGGGAATTCCACCA 1975058
Query 178035 GACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGA 178093
|| ||||| || || ||||||||||| || || || |||||||| | || |||| | ||
Sbjct 1975059 GATCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAAGATGGCCGCAC-CTTGTCTGA 1975117
Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGT 178129
|| || |||| || || || || || ||||| ||
Sbjct 1975118 CTACAATATCCAGAAGGAGTCGACCCTTCATCTGGT 1975153
Score = 95.1 bits (104), Expect = 3e-14
Identities = 93/120 (78%), Gaps = 0/120 (0%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|||||||||||||| ||||| || || || || ||||| || || ||||||||||| ||
Sbjct 1975317 AAGATTCAGGACAAGGAAGGTATTCCCCCAGATCAGCAGCGTCTGATCTTCGCCGGCAAG 1975376
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
|| || |||||||| | || || ||||||| ||| | ||||| || || || || |||
Sbjct 1975377 CAACTGGAAGATGGTCGCACCCTGTCCGATTACAACATTCAAAAGGAGTCTACCCTTCAT 1975436
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203682186322532
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |