Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20arizonae_20[refseq_20GCF_5F001654025.1_202016-05-09]
3,178 sequences; 141,386,800 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq6 129 5e-25
seq2 111 1e-19
seq3 107 2e-18
>seq6
Length=26536676
Score = 129 bits (142), Expect = 5e-25
Identities = 166/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || |||||||| | ||||| |||| || ||||||||| ||||| ||||||||
Sbjct 9461993 GCCACCACGTAGACGGAGCACCAAGTGCAAAGTAGACTCCTTCTGGATGTTGTAGTCGGA 9462052
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||| ||||| ||||| ||||| || || | |||
Sbjct 9462053 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 9462112
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
|| | ||||||||| ||| || ||| | | | ||||| | ||| ||
Sbjct 9462113 AATACCCTCCTTGTCTTGGATCTTGGCCTTAACATTCTCAATGGTGTCCGAGGGCTCGAC 9462172
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863
||||| || || ||||| || |||| ||||| ||||| |||||||||
Sbjct 9462173 CTCCAAGGTGATGGTTTTGCCAGTCAAAGTCTTGACGAAGATCTGCATG 9462221
Score = 125 bits (138), Expect = 7e-24
Identities = 168/232 (72%), Gaps = 2/232 (1%)
Strand=Plus/Plus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | |||||||| || || ||||||||| ||||| ||||||||
Sbjct 9462221 GCCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATGTTRTAGTCGGA 9462280
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||| ||||| ||||| ||||| || || | |||
Sbjct 9462281 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGGGG 9462340
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCA 41813
|| | |||||||| | || | || || | ||| | | ||||| | ||| |
Sbjct 9462341 AATACCCTCCTTGT-CTTGGATCTTGGCCTTAACATTTTCAATGGTGTCCGAGGGCTCAA 9462399
Query 41814 CCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
|||||| || || || || || |||| ||||| ||||| |||||||| ||
Sbjct 9462400 CCTCCAAAGTGATGGTCTTGCCAGTCAAAGTCTTGACGAAGATCTGCATATT 9462451
>seq2
Length=27840087
Score = 111 bits (122), Expect = 1e-19
Identities = 163/231 (71%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694
||| || || ||||| | ||||| |||| ||| ||||||||||||||| ||||||||
Sbjct 185598 GCCACCACGCAGACGGAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTGTAGTCGGA 185539
Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754
|| ||||| | || || ||||||||||||||||| ||||| ||||| || || | ||
Sbjct 185538 CAGAGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGG 185479
Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814
| | ||| ||||| ||| || ||| | | | ||||| | ||| ||
Sbjct 185478 GATTCCCTCTTTGTCTTGGATCTTGGCCTTGACATTCTCGATGGTGTCAGAGGGCTCGAC 185419
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| || || || || || || || || || ||||| || ||||| ||
Sbjct 185418 CTCCAAAGTAATGGTCTTGCCGGTGAGAGTTTTAACGAAGATTTGCATTTT 185368
>seq3
Length=22052390
Score = 107 bits (118), Expect = 2e-18
Identities = 164/231 (71%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||||||| || || ||||||||| || || ||||| ||
Sbjct 1975171 CCACCACGCAGACGGAGGACCAGATGAAGGGTCGACTCCTTCTGGATATTGTAGTCAGAC 1975112
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
| |||||| | || || || |||||||||||||| ||||| ||||| || || | |||
Sbjct 1975111 AAGGTGCGGCCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGTGGA 1975052
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACG-ACGACACAGTGTCGCTCGACTCCAC 41814
| | |||||| | | ||| | || || | ||| | | || ||| | ||| ||
Sbjct 1975051 ATTCCCTCCTTAT-CTTGAATCTTGGCCTTGACGTTCTCAATGGTATCGGAAGGCTCAAC 1974993
Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGTT 41865
||||| || || || || ||||||| || || ||||| |||||||| ||
Sbjct 1974992 CTCCAAGGTGATGGTCTTTCCCGTCAAAGTTTTAACGAAGATCTGCATTTT 1974942
Score = 104 bits (114), Expect = 2e-17
Identities = 104/135 (77%), Gaps = 0/135 (0%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
||||| || ||||| | |||| ||| || || |||||| |||||||| || |||||
Sbjct 1975459 CCGCCACGCAGACGCAGTACCAAATGAAGGGTAGACTCCTTTTGAATGTTGTAATCGGAC 1975400
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
|||||||| | || || || |||||||||||||| ||||| ||||| || || | ||||
Sbjct 1975399 AGGGTGCGACCATCTTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 1975340
Query 41756 ACGCTCTCCTTGTCC 41770
| | |||||||||
Sbjct 1975339 ATACCTTCCTTGTCC 1975325
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462285634973600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |