Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_000852.5 Length=330611 Score E Sequences producing significant alignments: (Bits) Value seq1972 95.1 3e-14 seq5267 93.3 9e-14 seq5266 93.3 9e-14 seq5402 89.7 1e-12 >seq1972 Length=1348 Score = 95.1 bits (104), Expect = 3e-14 Identities = 175/257 (68%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 292139 ACAATTGCTCCGATGATATCTTGAGGCACTCCCTCGAAATTAGCCAGCAGTTGCTTCGTA 292198 || || || ||||| | | || ||||| || | | || |||||||| ||||| || Sbjct 880 ACGATGGCGCCGATCAGGTTCTGCGGCACGGCCGAGTAGTTGGCCAGCAGCTGCTTGGTG 821 Query 292199 TCCTTTGGAAAGCAATAAGCTCCATAACCGAACGAAGGGTTTGAGTACCCCTGACCAATG 292258 ||||| || | ||| || | || || ||||| ||||| ||| | |||| | Sbjct 820 TCCTTGGGCAGGCAGTAGCCACCGTAGCCGAAGCTCGGGTTGTTGTAGTGCGTGCCAACG 761 Query 292259 CGAGGCTCCAGAGTCACACCATCAATGATTTCTTTCGCATTCATACCGTGAGACATTGCG 292318 || || ||||| ||| || || ||||| || | |||| ||||| | | || Sbjct 760 CGCGGGTCCAGGCACACGCCGTCGATGATCTCGCGGGTGTTCAGGCCGTGCGTCTGGGCA 701 Query 292319 AATGTATCTAGTTCGTTGAAGTATGCAACTCGCATTGCAAGATACGTGTTAGAGAATAGT 292378 | || || || ||||||||||| || || ||||| ||||| || ||||| | ||| || Sbjct 700 TAGGTGTCGAGCTCGTTGAAGTAGGCCACGCGCATCGCAAGGTAGGTGTTGGCGAACAGC 641 Query 292379 TTGACGGCCTCGGCTTC 292395 |||| ||||||||||| Sbjct 640 TTGATCGCCTCGGCTTC 624 >seq5267 Length=4296760 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 3299526 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 3299585 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 3299586 GCCCCACGTTGGGC 3299599 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3300114 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3300173 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3300174 CCCCACGTTGGGC 3300186 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3300653 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3300712 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3300713 CCCCACGTTGGGC 3300725 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3301196 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3301255 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3301256 CCCCACGTTGGGC 3301268 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3301725 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3301784 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3301785 CCCCACGTTGGGC 3301797 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3302233 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3302292 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3302293 CCCCACGTTGGGC 3302305 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3302599 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3302658 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3302659 CCCCACGTTGGGC 3302671 >seq5266 Length=3715358 Score = 93.3 bits (102), Expect = 9e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 165708 TTGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGA 165767 ||||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||| Sbjct 124311 TTGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGA 124370 Query 165768 GCCCCACGATGGGC 165781 |||||||| ||||| Sbjct 124371 GCCCCACGTTGGGC 124384 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 89731 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 89672 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 89671 CCCCACGTTGGGC 89659 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 747019 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 747078 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 747079 CCCCACGTTGGGC 747091 Score = 91.5 bits (100), Expect = 3e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 165709 TGCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAG 165768 |||||| ||||||||||||||||||| ||||| ||||||| ||||||||||||||| Sbjct 3676560 TGCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAG 3676501 Query 165769 CCCCACGATGGGC 165781 ||||||| ||||| Sbjct 3676500 CCCCACGTTGGGC 3676488 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 130770 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 130711 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 130710 CCCACGTTGGGC 130699 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 3677073 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 3677132 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 3677133 CCCACGTTGGGC 3677144 >seq5402 Length=10656099 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2438191 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2438250 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2438251 CCCACGTTGGGC 2438262 Score = 89.7 bits (98), Expect = 1e-12 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 165710 GCCCGTCTAGCTCAGTCGGTAGAGCGCCAGACTTTTAATCTGGTGGTCGTGGGTTCGAGC 165769 ||||| ||||||||||||||||||| ||||| ||||||| |||||||||||||||| Sbjct 2438630 GCCCGGCTAGCTCAGTCGGTAGAGCATGAGACTCTTAATCTCAGGGTCGTGGGTTCGAGC 2438571 Query 165770 CCCACGATGGGC 165781 |||||| ||||| Sbjct 2438570 CCCACGTTGGGC 2438559 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1057749144737490