Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_000872.1 Length=40739 Score E Sequences producing significant alignments: (Bits) Value seq1936 176 1e-39 >seq1936 Length=1051 Score = 176 bits (194), Expect = 1e-39 Identities = 402/594 (68%), Gaps = 16/594 (3%) Strand=Plus/Plus Query 1731 TCGATGTTTAGCGATAACACAGCTCTTGGTTTCGTATATCCCTACTTGGGTGAAGACGGT 1790 ||||||||||| ||||||||||| || | || |||| ||| || | | | | | | Sbjct 280 TCGATGTTTAGTGATAACACAGCGCTAGCGTTTGTATTTCCTTATCGTGATAATAATGAT 339 Query 1791 AGCCAAAAATGGCATATTGAACAACACAGTTTCATCCCGTGGCAACAGGCAGGGTCAATA 1850 | | | |||| |||| | || || || || || || ||||| | || || ||||| Sbjct 340 AAACCACGATGGTTTATTTATCAGCATAGCTTTATTCCCTGGCAGAAAGCCGGTTCAATT 399 Query 1851 GAAGCCAAAATTGAACAGGACGGTATCAACTACCGAGATTTAGAAACCAAGGGATTTTGT 1910 || || ||| | || |||||||| ||||| || || |||| |||||||||||| Sbjct 400 GAGGCTAAAGAAAAGCAAGACGGTATTAACTATCGGGACTTAGCTCAAAAGGGATTTTGT 459 Query 1911 ACAATTACAAGCCACCCACAAGGACTTATCAACCCAGAAGAAGTGTATCGCTGGTTTATA 1970 ||||||| ||||| || |||||||| ||||| || |||| |||| ||||| | Sbjct 460 ACAATTAGTAGCCATCCTCAAGGACTAATCAATGACGAGCAAGTTTATCAGTGGTTACTT 519 Query 1971 GATTATGTTGA-AGACAACTCACTTGACGTTGTCTTTTTTGGTTATGATGCCATGATGGT 2029 | | |||||| | || | ||| || ||||| || ||||||||||| | | || || Sbjct 520 AACTTTGTTGAGCGGCATC-GACTGGAAGTTGTTTTCTTTGGTTATGACG-CGTGGGGGC 577 Query 2030 TAA----TAAAATTATCAAAGCA-TTGGAATCTAATACAAGTTTTCCACT-CATGCCAAT 2083 ||| || ||| ||||| | || | ||| | ||| ||| | || |||| | Sbjct 578 TAACGCCTACAAT----CAAGCAGCTAGATTTAAATTCCGGTTGGCCATTGCAAGCCATT 633 Query 2084 CAGACAACGGACAAGTGAGCTAAAAGATCCTACAAAATTCCTTCAAACACTATTTATTGA 2143 | | || || || ||||| | || ||||| || || || | || || | ||| |||| Sbjct 634 C-GGCAGCGAACTAGTGAATTGAAGGATCCAACTAAGTTTTTGCAGACGATGTTTGTTGA 692 Query 2144 GGGCAATATCACACGTCGT-GATGATGAAATCATGCGGAAAGCCTTAATAAATGCAGTTA 2202 ||| | | || | | |||||| ||| ||| || || ||| ||||||| | | Sbjct 693 AGGCTCGGT-AGACCGCTTGGATGATCGAATTATGGAAAAGGCATTACTAAATGCTGAAA 751 Query 2203 TTAAAGAGGACAACATTGGTATCCAAGTAGACAAAATGAAATCCACCTACAAGATTGACG 2262 || | || ||||| |||||||| ||||| || ||| || |||| | |||||||| | Sbjct 752 TTTATGAAGACAAAATTGGTATTCAAGTCGATAAAGCTAAGGCCACATTGAAGATTGATG 811 Query 2263 TGGTGGATGCTCTTATTGATGCTTTTTACGATGGCATGTATGCGTTTGAGGACT 2316 |||| ||||| | |||||||| || | | | |||||| ||||| |||| Sbjct 812 TGGTAGATGCGTTAATTGATGCCTTATTTCAGGCTATGTATCACTTTGAAGACT 865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130234657918326