Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_000896.1 Length=43785 Score E Sequences producing significant alignments: (Bits) Value seq1936 259 1e-64 >seq1936 Length=1051 Score = 259 bits (286), Expect = 1e-64 Identities = 657/982 (67%), Gaps = 43/982 (4%) Strand=Plus/Plus Query 21086 TCGCAAGATAGTTTAGATGAAACTTACAAGCCAGAAACTTGGGTTAAGTCAAATCCACTC 21145 ||||| || | | | ||||||||||| ||||| || | |||||||| ||||| | Sbjct 1 TCGCAGGACAATCTGGATGAAACTTATAAGCCCGATATGTGGGTTAAAAGTAATCCCTTA 60 Query 21146 TTAGATTTACCCGATCAACGTGATAATTTACTAAAAGGTTTAACAGATAAGCGAGATAGT 21205 |||||||||| ||||| || ||||| || || || ||||||||||| ||| | Sbjct 61 CTAGATTTACCGAGCCAACGAGAAGTGTTACTGAACGGCTTGACAGATAAGCGCGATTCT 120 Query 21206 GACTTGCTCACTGGTAATATTTCGGATTTTCAAACTAAGAATTTAAATCTTTGGCTTAAA 21265 ||| | | || | | |||||||||| || || | || | ||||| || Sbjct 121 GACGCCTTGTCGGGCACACTCAACGATTTTCAAAACAAAAACCTTAACTTGTGGCTAGAA 180 Query 21266 CAATCAACTGACAGCTATCTT-AATTTAAAAGACGTTGAAGATGCTGT-ATATAATGATT 21323 ||||| || ||||||| |||| || | |||||||| ||| | |||| || ||| Sbjct 181 CAATCGACCGACAGCT-TCTTGAAACTGCCTGACGTTGAGCGAGCTATTATATCATCATT 239 Query 21324 TTAATATTGATGGTCATGAAGTATTTATTGGATTTGATTATTCAATGTTTTCTGATAATA 21383 | | | |||||| || |||| | |||||| |||||||| || |||||| |||||| | Sbjct 240 T-AGTTTTGATGATCGGCAAGTTTATATTGGCTTTGATTACTCGATGTTTAGTGATAACA 298 Query 21384 CAGCTCTTAGTTTCGTTTATCCTTATGATGATGGGAA----ATTCCA--------TATTG 21431 |||| || || || | ||||||| |||| || | ||| |||| Sbjct 299 CAGCGCTAGCGTTTGTATTTCCTTATCGTGATAATAATGATAAACCACGATGGTTTATTT 358 Query 21432 AGCAGCATAGTTTTATTCCGTTTCAACAAGCTGGATCAATTGAAGCTAAGGAAAAACAAG 21491 | |||||||| |||||||| | || |||| || |||||||| ||||| ||||| |||| Sbjct 359 ATCAGCATAGCTTTATTCCCTGGCAGAAAGCCGGTTCAATTGAGGCTAAAGAAAAGCAAG 418 Query 21492 ATGGAATTACATATCGTAACTACCCTGAATAC------TGCACAATTAC-AGCACATCCA 21544 | || |||| ||||| ||| || || | || ||||||| ||| ||||| Sbjct 419 ACGGTATTAACTATCGGGACTTAGCTCAAAAGGGATTTTGTACAATTAGTAGC-CATCCT 477 Query 21545 CAGGGGATTATTAATCCGGAACAAATTTATAAATGGCTTTTAAACTATGTTGAACAACAT 21604 || || | || ||| || ||| ||||| | ||| | | |||| |||||| | ||| Sbjct 478 CAAGGACTAATCAATGACGAGCAAGTTTATCAGTGGTTACTTAACTTTGTTGAGCGGCAT 537 Query 21605 CAATTAAAGGTTAAATTCTTTGGTTATGACCGTTTTGGATCTTATCAAGTTAAGAACATC 21664 | | | | ||| |||||||||||||| || | || | || | | | ||| Sbjct 538 CGACTGGAAGTTGTTTTCTTTGGTTATGA-CGCGTGGGGGC-TAACGCCT----ACAATC 591 Query 21665 ACTGAGTCACTAAATGTGAATACTGATTGGTATATTATGGATATTCAACAAAGAACATCA 21724 | || ||| || | ||| | | |||| | | |||| || |||| | Sbjct 592 A---AGCAGCTAGATTTAAATTCCGGTTGGCCATTGCAAGCCATTCGGCAGCGAAC-TAG 647 Query 21725 GCTCTTGCA-AATCCTACTAAGTTTTTGCAGGAGCTTTTTGTT--ACCCACAAAGTTACT 21781 ||| | |||| ||||||||||||||| | | |||||| | | | | || Sbjct 648 TGAATTGAAGGATCCAACTAAGTTTTTGCAGACGATGTTTGTTGAAGGCTC---GGTA-G 703 Query 21782 ATCCCT--AATGATCCAGTAATGCAGAAAGCTTTACTCAATGCAGTAATTAAGGCAGATA 21839 | | || |||||| | | ||| | || || ||||| ||||| | |||| | | ||| | Sbjct 704 ACCGCTTGGATGATCGAATTATGGAAAAGGCATTACTAAATGCTGAAATTTATGAAGACA 763 Query 21840 AAATCGGTATTCACGTAGATAAGGACAAAGCAACTCTGCAAATTGATGTTGTAGATGCCA 21899 |||| |||||||| || ||||| | || || || || | |||||||| |||||||| Sbjct 764 AAATTGGTATTCAAGTCGATAAAGCTAAGGCCACATTGAAGATTGATGTGGTAGATGCGT 823 Query 21900 TTATTGATGCACTATATCAAGCTATGTATTACTTTGATGAAAATTCAGACTTAAATAATA 21959 | |||||||| ||| ||| ||||||||| ||||||| || ||||||| | || ||| Sbjct 824 TAATTGATGCCTTATTTCAGGCTATGTATCACTTTGAAGACTTTTCAGACGTGAACAATC 883 Query 21960 AGGATACAGAAATAGACAGAATGACGGAACAACAAGTTCTGGATTGGTTTAAGAATTCAA 22019 |||| | | | || | |||| ||| |||||||||| || |||||||| || | Sbjct 884 CTGATAAACAGGTCGAGCGTATGAACGAAAAACAAGTTCTTGAATGGTTTAATAACCCGG 943 Query 22020 AATCAGGACTACTAGGAGGTGA 22041 | |||||| | ||||||| ||| Sbjct 944 AGTCAGGATTGCTAGGAGATGA 965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 139981218642122