Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq5267 114 1e-20 seq4493 93.3 4e-14 >seq5267 Length=4296760 Score = 114 bits (126), Expect = 1e-20 Identities = 291/440 (66%), Gaps = 2/440 (0%) Strand=Plus/Plus Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014 |||||||| || || ||||| || | |||||||| | | ||| || ||||| || Sbjct 668737 AACATCAGCACGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAG 668796 Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074 || |||| || |||||| || || ||||| | ||| || || | |||||| || Sbjct 668797 AAGGTCAGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCG 668856 Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134 ||||| || |||||||||| ||||| || || | || || || | | || | Sbjct 668857 CTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGATGCGCTCCCCGAAGTTGGCCGCC 668916 Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193 ||| | || ||||| | |||| || || || |||| | ||| || || Sbjct 668917 TTGG-AGGAGATCCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCGGGCATTGTCTC 668975 Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253 ||||| || || | | || | || | || || || || ||||| || | Sbjct 668976 GATGGCGTTGAACAGGTATTCGCGCTGGTGCGGATCCCGGATGTAGGTGTCGATCAGCAC 669035 Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||||||| || ||||| | |||||||||||| ||||| || || || ||||| || || Sbjct 669036 ACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGC 669095 Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373 |||| || || || ||| | ||| || || | || || ||||| |||||||| || Sbjct 669096 CTCCGTGATCTGCACCTCCTGGCTGAAGCGCTCGACCAGGTTCTCGTTAACGATGCCATC 669155 Query 17374 GCTCGCGGCGAAAAACGCCA 17393 | |||||||| || |||| Sbjct 669156 GGAGGCGGCGAAGAAGGCCA 669175 >seq4493 Length=3184771 Score = 93.3 bits (102), Expect = 4e-14 Identities = 175/255 (69%), Gaps = 2/255 (1%) Strand=Plus/Plus Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842 ||||||||||| | ||| ||||| | || || |||||||| | ||||||||| ||| Sbjct 604305 TTCATATATCGCACCTTGCCGAAGATGGCCCGCTCCTTCCAGCCCATGTCGTGGACTCCC 604364 Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902 | | || ||| | ||| || || || ||||||||||| ||| || | ||| || Sbjct 604365 CCAATGGACCACATGCAGCCGACATAGCCGTTGGGATCGCGTCCGTCGAGGCTGTACTTG 604424 Query 119903 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961 ||||||| ||| || | | | ||| ||||| || || |||| || || || Sbjct 604425 TCGTTTAGCAGGATCGCATATTCC-AGCGCCTCCTCAGGGGTGGCGGTCCACTCGAGAAT 604483 Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021 || || ||||||||||| || | | || ||||| || || || || |||| || || Sbjct 604484 CTTCTTGGCCCAGTACATGCGCAGAAAGCCGTGCATCTTGCCCTCGCGCACCAGCTGCAG 604543 Query 120022 TTGTGCGGCGTTCCA 120036 || || | |||||| Sbjct 604544 CTGCGCCGAGTTCCA 604558 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517509869945640