Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_001132.2
Length=161773
Score E
Sequences producing significant alignments: (Bits) Value
seq5267 114 1e-20
seq4493 93.3 4e-14
>seq5267
Length=4296760
Score = 114 bits (126), Expect = 1e-20
Identities = 291/440 (66%), Gaps = 2/440 (0%)
Strand=Plus/Plus
Query 16955 AACATCAGACATGCGAAATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAA 17014
|||||||| || || ||||| || | |||||||| | | ||| || ||||| ||
Sbjct 668737 AACATCAGCACGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAG 668796
Query 17015 AATGTCAACCCGGGCATCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCA 17074
|| |||| || |||||| || || ||||| | ||| || || | |||||| ||
Sbjct 668797 AAGGTCAGTCCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCG 668856
Query 17075 GAAAAGAATATACCCTCGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCT 17134
||||| || |||||||||| ||||| || || | || || || | | || |
Sbjct 668857 CTGAAGAAGATGCCCTCGACGGCGGCAAAGGCAATGATGCGCTCCCCGAAGTTGGCCGCC 668916
Query 17135 TTGTTACGA-ATCCATTTCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTC 17193
||| | || ||||| | |||| || || || |||| | ||| || ||
Sbjct 668917 TTGG-AGGAGATCCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCGGGCATTGTCTC 668975
Query 17194 TATGGCCTTAAATAATTTCTCTTTTTCCTGTAGGTCGATTATATACGTATCGATGAGTAG 17253
||||| || || | | || | || | || || || || ||||| || |
Sbjct 668976 GATGGCGTTGAACAGGTATTCGCGCTGGTGCGGATCCCGGATGTAGGTGTCGATCAGCAC 669035
Query 17254 GCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313
|||||||| || ||||| | |||||||||||| ||||| || || || ||||| || ||
Sbjct 669036 ACTGTACATCTCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGC 669095
Query 17314 TTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTC 17373
|||| || || || ||| | ||| || || | || || ||||| |||||||| ||
Sbjct 669096 CTCCGTGATCTGCACCTCCTGGCTGAAGCGCTCGACCAGGTTCTCGTTAACGATGCCATC 669155
Query 17374 GCTCGCGGCGAAAAACGCCA 17393
| |||||||| || ||||
Sbjct 669156 GGAGGCGGCGAAGAAGGCCA 669175
>seq4493
Length=3184771
Score = 93.3 bits (102), Expect = 4e-14
Identities = 175/255 (69%), Gaps = 2/255 (1%)
Strand=Plus/Plus
Query 119783 TTCATATATCGTATCTTTCCGAACACGGTACGTTCCTTCCACGCTCTGTCGTGGAGCCCC 119842
||||||||||| | ||| ||||| | || || |||||||| | ||||||||| |||
Sbjct 604305 TTCATATATCGCACCTTGCCGAAGATGGCCCGCTCCTTCCAGCCCATGTCGTGGACTCCC 604364
Query 119843 GCTACGGCCCATAGGCATCCCACGTATCCGTTGGGATCCGTTCCATCTAACTCGTATTTA 119902
| | || ||| | ||| || || || ||||||||||| ||| || | ||| ||
Sbjct 604365 CCAATGGACCACATGCAGCCGACATAGCCGTTGGGATCGCGTCCGTCGAGGCTGTACTTG 604424
Query 119903 TCGTTTAAGTAGATA-CAGACGCTTAACGCACTTTCAGGAGTCTCGCTCCATTCCAGTAt 119961
||||||| ||| || | | | ||| ||||| || || |||| || || ||
Sbjct 604425 TCGTTTAGCAGGATCGCATATTCC-AGCGCCTCCTCAGGGGTGGCGGTCCACTCGAGAAT 604483
Query 119962 ttttttAGCCCAGTACATACGTAAGTATCCATGCATTTTACCTTCACGAACCATTTGAAG 120021
|| || ||||||||||| || | | || ||||| || || || || |||| || ||
Sbjct 604484 CTTCTTGGCCCAGTACATGCGCAGAAAGCCGTGCATCTTGCCCTCGCGCACCAGCTGCAG 604543
Query 120022 TTGTGCGGCGTTCCA 120036
|| || | ||||||
Sbjct 604544 CTGCGCCGAGTTCCA 604558
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 517509869945640
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |