Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5396 327 1e-84 >seq5396 Length=9561034 Score = 327 bits (362), Expect = 1e-84 Identities = 1207/1880 (64%), Gaps = 28/1880 (1%) Strand=Plus/Plus Query 52798 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 52857 ||| |||| ||||| ||||||| | || || || || || || ||||||||||| Sbjct 8233758 CTTATCCACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTCC 8233817 Query 52858 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTTGTTAGTTTGGAATAACTCGG 52917 ||||| ||||| |||| || || || || || ||||| ||| | || Sbjct 8233818 AGTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTGG 8233877 Query 52918 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 52977 ||||| | ||| || || | || ||||| ||||| ||||| ||||| | ||||| || Sbjct 8233878 CTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGC 8233937 Query 52978 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 53036 ||| || ||| ||| ||| || |||||||| | ||||| || | |||| | | Sbjct 8233938 CATCTTAATGGTCGACTTCACTGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCTT 8233997 Query 53037 CTTCTGGAAGGTTTG--TATTCTGAATAGATCCACCATCTACCA-TAATCCTATTCTTGA 53093 || ||| || | ||||||| || || || || || | | || ||||| | Sbjct 8233998 CTGGGGGATGGCCTCAATATTCTGGATTGAGCC-CCTGCTGGAAATGATTTGGTTCTTCA 8234056 Query 53094 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 53153 | || || | ||| || | ||| |||| | || | | ||| | ||||| |||| Sbjct 8234057 TGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTT 8234116 Query 53154 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 53213 | ||||| ||||||| |||| || || |||||||| | || ||||| || | ||| | Sbjct 8234117 GGAATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAGATT 8234176 Query 53214 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 53273 | || || |||| |||||| ||||| || ||||| |||||||| || ||||| | | Sbjct 8234177 CGTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGT 8234236 Query 53274 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 53332 | | | ||||| || | |||| || || || | ||| | |||||| | | | Sbjct 8234237 TCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTTGTC 8234295 Query 53333 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 53392 || || || ||||| || || || || ||| |||| Sbjct 8234296 GGCACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGACTTCCCTCATAG 8234355 Query 53393 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 53452 || || ||||| || || ||| || ||||||||||| || || | || ||||| || Sbjct 8234356 GTTTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAG 8234415 Query 53453 ATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGATAATT 53511 ||||||||||| |||| || ||| | || | ||||| || ||| | || || Sbjct 8234416 ATGGTTTCGAATATCTGCTGATTCAAGAGACCG-GCTTCTTCACTTTCATAGGGGAAACG 8234474 Query 53512 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 53571 | ||||| | ||||| || ||||| || ||||| || || | || | ||| ||| Sbjct 8234475 CATAAGAATTAGGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAA 8234534 Query 53572 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGGTT 53631 || || | | || ||||| | || || | || ||||| || || || || || || Sbjct 8234535 GTTGGATTTCTTTGCCTCTGGCAGGGGGTAGAAGTTTATATCGATGATCTTGTTAAGATT 8234594 Query 53632 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATTGTCCATCTA---- 53687 || || ||| || ||||| ||||| ||||| || ||| ||| Sbjct 8234595 CTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTAT-GTCT-TCTCGGGA 8234652 Query 53688 -TTACAAACATGTTCAATGCAATAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 53746 | || |||||||| | || || ||||||| || || || || | ||| | | | Sbjct 8234653 GTGACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAG 8234712 Query 53747 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGA 53806 | || | | || || ||||| | || || ||||||||||| || | ||| || || Sbjct 8234713 GAGTACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGG 8234772 Query 53807 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGCGTACCAGTTTCAATCTGG 53866 || ||||| |||| || ||||||||| | || ||| | || | |||||||| | ||| Sbjct 8234773 TTGCTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGT 8234832 Query 53867 GATTCTATAATCGCTTTCCAGACGACACGAGCCTTTATTATAGATTTGTATCTCTTTTCT 53926 | || ||||| || ||| | | ||||||| | | ||| | | || Sbjct 8234833 GCCTCAATAATGGCGAACCACAAGGATTGAGCCTTAACCGTTCGGTTGG--CACGACCCT 8234890 Query 53927 CTTTCGTATAGTGT--ATACAATCGTTCAAACTCGTCTCCCCAAACATTGTCCAATCCAG 53984 ||| | ||| | |||||| ||| || || || ||||| |||| || | |||| Sbjct 8234891 CTTGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAG 8234950 Query 53985 GACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGA 54044 | |||| || ||||||||| | ||||| ||||| | ||| || || |||||||||| Sbjct 8234951 GGCATTTATGCGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGA 8235010 Query 54045 GATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTAT 54104 |||| || ||||| || || || ||||| | || | || ||||| || || || | Sbjct 8235011 GATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGT 8235070 Query 54105 TCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGTCA 54164 |||| ||||| || |||||| | | | || || ||||| || |||| ||| |||| | Sbjct 8235071 TCTTCTTAAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAA 8235130 Query 54165 TAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTC 54224 | || || || ||| ||||||||||| | || | || || || | || | Sbjct 8235131 AGGCACCGGGACGCTTGCCGCCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCC 8235190 Query 54225 TCAACATTGGAATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGG 54284 ||||||| |||| | |||||||| | || || || ||| | || || | || | | Sbjct 8235191 TCAACATGGGAACCAGGCCATTGGAAGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTTG 8235250 Query 54285 CACGAATATTACTAATTGA----TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCG 54340 | || || ||| || || || || || || ||| || ||||| | ||| Sbjct 8235251 CTCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCGAGATCATGGCG 8235306 Query 54341 CATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAA 54400 || | | | | | | | |||||||| || || | ||||| | | || ||| Sbjct 8235307 CACTGCTCCACGGACTTAAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAAGAGGAAA 8235366 Query 54401 CAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTA 54460 || |||| || | ||| | || | || ||| | || || || || || || Sbjct 8235367 CAAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGCGTTGGCGACGCATGAGTG 8235426 Query 54461 AACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCTGAGTCTATATCCCATTGATGA 54520 || || || || | || || || || || | |||| ||||||||| | ||| Sbjct 8235427 AAGTATCGCTCCGACAAGAGGTTATAAGTTTCCACGGCTGCATCTATATCCTCTCCATGG 8235486 Query 54521 ATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATT 54580 ||||| | || || ||||| ||||| || || || | ||| |||| || |||| | Sbjct 8235487 ATTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCAGCGATTTTTCCGTTTCTC 8235546 Query 54581 TTCAGCAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGT 54640 ||||||| ||||| ||| | || || || ||||||||||| || |||||| || Sbjct 8235547 TTCAGCAGATAGGAACGTTCGAGGGTCTTGAACCCAAAATAGTTATACCCAAAGTCGCGG 8235606 Query 54641 TCGTAAATAATAACTGAGTT 54660 ||||| || ||| ||||| Sbjct 8235607 TCGTAGATTATAGAAGAGTT 8235626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593680610945040