Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_001650.2 Length=184439 Score E Sequences producing significant alignments: (Bits) Value seq5165 367 2e-96 >seq5165 Length=2344106 Score = 367 bits (406), Expect = 2e-96 Identities = 603/868 (69%), Gaps = 20/868 (2%) Strand=Plus/Plus Query 145536 TTAGACCGCCATCTCCATGGGGATGGCCGCGTGGGGGTGGTAGCCCTCCAGCGCAAAGTC 145595 |||||| ||||| ||||| ||| || || || | ||| || | | | ||||||| Sbjct 2001892 TTAGACGGCCATATCCATCTTGATCTTCGGGTACGGATTGTAACCGACTATCTCAAAGTC 2001951 Query 145596 CTCCGCCCTGAAGTCATCTATGTCCTCCACCCGCCTCAGGATCCTGAGCCTGGGAAAGGG 145655 ||| | |||||| || ||||||| |||| | | | |||| ||| |||| ||||| Sbjct 2001952 CTCGTAGCGGAAGTCCTCGATGTCCTGCACCTGGCGCTTGATCACCAGCTTGGGGAAGGG 2002011 Query 145656 CCGGGGGCTCCTGGTCAGCTGGAGCTTCAGGGGCTCCACGTGGTTGAGGTAGACGTGCGC 145715 ||| || | | |||||| | | || |||||||||||||| || |||||||||| Sbjct 2002012 CCGCGGCGTGCGCTCCAGCTGCTCCCTTAGCGGCTCCACGTGGTTCAGATAGACGTGCGT 2002071 Query 145716 GTCCCCCAGGACGTGGATGAAGTCCCCGGGCTCGAGGCCCGTGAGGTGGGCGACCATGTA 145775 ||| |||| | ||| | ||||| ||||||| |||||||| | ||||||| ||||| Sbjct 2002072 GTCGCCCATGGTGTGCACAAAGTCGCCGGGCTTCAGGCCCGTCACATGGGCGATCATGTG 2002131 Query 145776 GGTCAGCAGGGAGTAGCTGGCTATGTTGAAGGGCACCCCCAGCCCCATGTCCCCCGAGCG 145835 ||| ||||||| |||| ||| |||||||||||||| ||||| |||||||| | | Sbjct 2002132 GGTGAGCAGGGCGTAGGAGGCGATGTTGAAGGGCACGCCCAGGCCCATGTCGGCGCTCCT 2002191 Query 145836 CTGGTACAGCTGGCAGGAGAGCTCCCCGCCCGCC------ACGTAGAACTGGCACAGGAG 145889 ||||||||||||||||||||||| |||| |||| || ||||||||| |||| Sbjct 2002192 TTGGTACAGCTGGCAGGAGAGCTCACCGCGCGCCTGCGAGACATAGAACTGGGCCAGGCA 2002251 Query 145890 GTGGCAGGGCGGCAGGGCCATGGCGGGCAGGTCCGCCGGGTTCCAGGCGGTGAGGACGAG 145949 |||||| ||||| |||||||| || | ||| || |||||||| | | || || Sbjct 2002252 GTGGCACGGCGGAAGGGCCATCTTTGGTATGTCGAGGGGATTCCAGGCCGACATGATGAT 2002311 Query 145950 CCTCCTGCTCTCGGGGTTCCTCTTGATCTCCCCTATCAGGTCCCTGAGCTGGTCCACGCC 146009 | |||| | ||| ||| |||||||| | |||| | | | |||||| | ||| Sbjct 2002312 GCGCCTGTCCGAGGGATTCTTCTTGATCGTGTCGATCACCTGGCGCAACTGGTCGATGCC 2002371 Query 146010 CTGCCCCCGGTAATCTGTC-TTGGAGTCCACGTACGCGGCCCCGAAGTGCCTCCACTGGA 146068 || || | |||||| ||| | | || ||||| ||||||| ||||| | |||||||| Sbjct 2002372 CTTGCCGCTGTAATC-GTCGTCGCAGGTGCCGTACTCGGCCCCAAAGTGACGCCACTGGA 2002430 Query 146069 ACCCGTAGACGGGCCCCAGGTCCC------CGGGCTCCCTGTGCCCCAGCCCGGCCCGGG 146122 | ||||| || || |||||||| | || ||||| |||||||||| | || Sbjct 2002431 AGCCGTAAACCGGGCCCAGGTCGCCGACGGCGCGCTCCGTGTGCCCCAGTTTGTCC---- 2002486 Query 146123 CGAGGAAGTCCCGGGACCCGTTGGCGTCCCAGATCTTGACGCCCCTCGCGGAGAGCTCAT 146182 ||||| |||| || | ||| |||||||||| | ||| | | || ||| | Sbjct 2002487 --AGGAACTCCCTGGTGCTGTTCTCGTCCCAGATGTGCACGTTCTTGGCCTGCAGCAGCT 2002544 Query 146183 TGGAGTCCGTGGACCCCCTGATGAACCAGAGCAGCTCTTCGAGGACCCCCCTCCAGAAGA 146242 ||| |||||| || | |||||||| |||||| ||| || || | |||||| Sbjct 2002545 TGGCGTCCGTCTTGCCGGCCACGAACCAGATCAGCTCCTCGGCCACGCCGCGGAAGAAGA 2002604 Query 146243 CCCTCTTGGTGGTCAGCAGGGGGAACTGGCCCCGCAGGGAGTACTTGGCCTGGTCCCCGA 146302 | | |||||||||||||||||| || | | |||| | | | |||| | |||| Sbjct 2002605 CGCGCTTGGTGGTCAGCAGGGGAAAGGAGTCGCGCATGTTGAAGCGCATCTGGGCGCCGA 2002664 Query 146303 AGACGGACAGGGTGCCCACGCCCGTCCTGTCCCCCCTGCGCACCCCGTTCGCCAGGATCT 146362 | | |||||| |||||||| | || | ||| || || | || ||||| | ||| | Sbjct 2002665 ACAGGGACAGCGTGCCCACCGCGGTGCGATCCATCCGCTGCTCTCCATTCGCGATGATGT 2002724 Query 146363 CCCTGACGGTGTTGAGGTACTGGTGCTC 146390 |||| || ||| |||||||| | ||| Sbjct 2002725 CCCTCACCAGGTTCAGGTACTGCTCCTC 2002752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590036062572920