Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_001875.2 Length=131995 Score E Sequences producing significant alignments: (Bits) Value seq5402 129 5e-25 seq5238 125 6e-24 seq5395 113 4e-20 seq5170 107 2e-18 seq5396 105 6e-18 >seq5402 Length=10656099 Score = 129 bits (142), Expect = 5e-25 Identities = 166/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 20947 TTCCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCG 21006 |||| |||||||| | ||| |||| |||||| || |||||||| || ||||| || || | Sbjct 571409 TTCCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAG 571468 Query 21007 CCAGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGG 21066 || || | ||||||| ||||| ||||| || | || || | |||||| || || Sbjct 571469 AAAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 571528 Query 21067 GCACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCG 21126 | | || |||||||| |||||| ||||| | ||| || ||| |||||| Sbjct 571529 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCA 571588 Query 21127 TTTCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| || || |||||||| || ||||| Sbjct 571589 CCTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||| |||| || | || |||||||| || ||||| ||||| | | Sbjct 571639 CCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 571698 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | |||||||||| || ||||| || | || || | |||||| || ||| Sbjct 571699 AGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 571758 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | | | || || ||||||| Sbjct 571759 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACC 571818 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTGAAT 21182 |||| |||||||||||| || || || || || ||||| || ||||||||| || Sbjct 571819 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATTTTGGAT 571872 >seq5238 Length=3592495 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | || |||||||| || ||||| ||||| | | Sbjct 2679460 CCACCGCGTAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2679401 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || ||||||||||||| ||||| || | || || | |||||| || ||| Sbjct 2679400 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 2679341 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||| |||||||| |||||| ||||| | ||| || || |||||| Sbjct 2679340 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 2679281 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 |||| ||| |||||||||||||| | ||||| || || |||||||| Sbjct 2679280 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234 >seq5395 Length=2659632 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | |||||||| || | ||||||||||| || ||||| ||||| | | Sbjct 975531 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 975590 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| || || || | || || | ||||||||| ||| Sbjct 975591 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 975650 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| ||||| | ||| ||||| |||||| Sbjct 975651 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACC 975710 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCAT 21175 || | ||| ||||||||||| || | || || || || || ||||| Sbjct 975711 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 975757 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || || || | |||||||| || | ||||||||||| || ||||| || || | | Sbjct 975759 CCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 975818 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| | ||||||||||||| || || || | || || | ||||||||| ||| Sbjct 975819 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 975878 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | || |||||||| |||||| || || | ||| || || |||||| Sbjct 975879 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACC 975938 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | ||| ||||||||||| || | || || || || |||||||| ||| Sbjct 975939 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATGTTG 975989 >seq5170 Length=6624210 Score = 107 bits (118), Expect = 2e-18 Identities = 228/336 (68%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 23617 CCAATGATGCCGCAGCCCAGCCGGCCGCCAGAATTGCCCGTGGTCTTGCTGAGCGGGTGC 23676 || |||| ||||||||| | ||| | || | || ||||||| |||||| ||| ||| Sbjct 512635 CCGATGACGCCGCAGCCAATGCGGGCACCTGCGTTTCCCGTGGACTTGCTCAGCTCGTGG 512576 Query 23677 TCGCCGAGGCCCAGGTCATCGCGGTCCGTGTGCACGACCAGGCTGCGGCCCAATATACTC 23736 | || |||| || |||||| || | ||| || || | | |||| || | || || Sbjct 512575 CCACCCTGGCCGAGATCATCGGCATCGGCGTGGACCACAACGGTGCGCCCGATGATGCTG 512516 Query 23737 AACGGC-CCAAACAGGGTTATCACGTTGTCGCTCATGTGTATGGCCGTGAGTGCGGTGCA 23795 |||| || ||||| || ||| |||| | |||| || || || | || || Sbjct 512515 T-CGGCGCCGAACAGCGTGATCTTCGAGTCGGTGATGT---TGACCTTG---GTGGGACA 512463 Query 23796 GCCCGCAGAGCGCACG---TTGCCCAGGTCGCCGACGTGTCGCTCCGCGGCGTCGGGCGC 23852 | | | | | | || ||||||||||| || | ||| || | | || || |||| || Sbjct 512462 GTCGCCGGTGGCCTCGATGTTGCCCAGGTCTCCCAGGTGACGGTTCTCGTCGGCGGGAGC 512403 Query 23853 GCCGTGTCTCTGGCGGGTGGGGTTAAAGTGCTCGCCAGCGGACGTGCAGCCGTTGCTGGT 23912 ||||| || || | ||| || |||||| || | ||| ||||||||||| || | Sbjct 512402 TCCGTGCTCCTTGCCGTAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTT 512343 Query 23913 GTCGCCGAATTCGTGCACGTGAAAACCGTGCAGCCC 23948 ||| ||||| ||||| ||||| || |||||||| || Sbjct 512342 GTCCCCGAACTCGTGTACGTGGAATCCGTGCAGGCC 512307 >seq5396 Length=9561034 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 20949 CCCCCTCGCAGCCTGAGCACCATATGCAAAGTGGACTCCTTTTGAATGTTATAGTCCGCC 21008 || || ||||| | ||||||| ||||||||||||||||| |||||||||||||| | Sbjct 8331077 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 8331018 Query 21009 AGGGTTTGGGCGTCCTCCAGCTGTTTGCCCGCATAAATAAGTCTCTGCTGGTCCACGGGC 21068 ||||| || | || |||||||| ||||| || | || || | |||||| || || Sbjct 8331017 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 8330958 Query 21069 ACGCCTTCCTTGTCGGCGATCTTTTGTTTCACCTGGCCGACAGTATCACCGGGCTCCGTT 21128 | ||||| ||||| ||||| ||| || | ||| |||||| || || Sbjct 8330957 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACC 8330898 Query 21129 TCCACGGTAATGGTCTTGCCGGTTAACGTTTTGACAAATATTTGCATTTTG 21179 || | || ||||||||||| || | || || || || || ||||| ||| Sbjct 8330897 TCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 8330847 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 422230777073468