Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq5267 544 8e-150 seq5238 150 2e-31 seq5395 147 2e-30 seq5170 132 5e-26 seq5396 127 2e-24 seq5402 118 1e-21 >seq5267 Length=4296760 Score = 544 bits (602), Expect = 8e-150 Identities = 595/785 (76%), Gaps = 8/785 (1%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||| ||||| || ||||||||||| ||||||||||| || ||||||||| || ||||| Sbjct 669280 AGGCTGAGGCCTCTTTCTGGACCGTGGAGGAGGTGGATCTCTCCAAGGACCTGACCGACT 669221 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 || | ||| |||| ||| |||||||||| |||||| ||||||||||||||| ||||||| Sbjct 669220 GGCACCGCCTGAAGGACGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCG 669161 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 || ||| |||||||| |||||||| ||||||||||| ||| |||||||||||| | Sbjct 669160 CCTCCGATGGCATCGTTAACGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTGCAGATCA 669101 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 | ||||| || |||||||| ||||| ||||||||||||||||||||||||||||| |||| Sbjct 669100 CGGAGGCTCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGT 669041 Query 116895 ATTCGACCCTCATCGACACGTACGTGCGCTCTTCGGAGGAGAAGC---TCCGTTTGTTGA 116951 | || |||||||| ||| | || | || | || || | | | ||| | Sbjct 669040 ACAGTGTGCTGATCGACACCTACATCCGGGATCCGCACCAGC-GCGAATACCT--GTTCA 668984 Query 116952 ACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCG 117011 ||||||||||||| ||||| || || ||||| || ||||| || ||||||| Sbjct 668983 ACGCCATCGAGACAATGCCCGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATCT 668924 Query 117012 CCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCT 117071 || || | |||| |||||| |||||| | | ||||| || |||||||||||| ||| Sbjct 668923 CCTCCAAGGCGGCCAACTTCGGGGAGCGCATCATTGCCTTTGCCGCCGTCGAGGGCATCT 668864 Query 117072 TCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCC 117131 |||| ||||| |||||| |||| || ||||| ||||| ||||| || ||||| || | Sbjct 668863 TCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCTGATGCCGGGAC 668804 Query 117132 TGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTGTT 117191 |||| ||| |||||||||||||||| | |||||||| ||||| |||||||||||| Sbjct 668803 TGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTTGCCGTGC 668744 Query 117192 TGCTGTTCAAGCATTTGGTGCAGCGACCGAGCGCG-GCGCGCGTCAGGGAGATCGTCACC 117250 || ||||| |||| |||||||||||||| || ||| | |||| ||| |||||| || | Sbjct 668743 TGATGTTCCAGCACTTGGTGCAGCGACCCAG-GCGCGAGCGCATCATCGAGATCATCCGC 668685 Query 117251 GACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTGCTGGGA 117310 || || || ||||| |||||| ||||||||||| || |||| || || | || Sbjct 668684 GATGCTGTGGCCATAGAGCAGGAGTTCCTCACCGATGCCTTGCCCGTAAACCTCATCGGC 668625 Query 117311 CTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTGCTCGAG 117370 | |||||||| |||||||| |||||||| ||||| || || | |||||| | ||| Sbjct 668624 ATGAATTGCGACCTCATGTCGCAGTACATCGAATTCGTGGCGGATCGTCTGCTGGTGGAG 668565 Query 117371 CTGGTCGGCGCCAAGCACTACAACACGCCCAACCCGCTGGACTTTATGAACCTCATCTCC 117430 |||| || | |||| |||||| || ||||| | |||| ||| | | ||||| Sbjct 668564 CTGGGCGTTGGCAAGATCTACAATACCAAGAACCCCTTCAACTTCATGGAGATGATCTCG 668505 Query 117431 TTGGA 117435 |||| Sbjct 668504 CTGGA 668500 >seq5238 Length=3592495 Score = 150 bits (166), Expect = 2e-31 Identities = 163/216 (75%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| ||||| ||||||||| | || || || | | Sbjct 2679234 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 2679293 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| |||||||||||| | || ||| Sbjct 2679294 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 2679353 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| |||||||| |||| |||||||| |||||||||| Sbjct 2679354 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCCGACTACAAC 2679413 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 |||||||||||| | || || || || ||| | ||| Sbjct 2679414 ATCCAGAAGGAGTCGACCCTCCACCTGGTGCTCCGC 2679449 >seq5395 Length=2659632 Score = 147 bits (162), Expect = 2e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || || || ||||| ||||||||| | || ||||| || || Sbjct 975757 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 975698 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | |||| || || | ||||| ||||| |||||| | ||||| Sbjct 975697 GATACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCA 975639 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || |||| ||| || || |||||||| |||| |||||||| ||||||||| Sbjct 975638 GCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAA 975579 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGCG 40918 ||||||||||||| |||| || || | ||| | || || | || |||| Sbjct 975578 CATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGGCG 975529 Score = 147 bits (162), Expect = 2e-30 Identities = 164/219 (75%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || |||||||| ||||| || || || || ||||| ||||||||| | || ||||| || Sbjct 975988 AACATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 975929 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | | |||| || || | ||||| ||||| |||||| | ||| Sbjct 975928 TCCGACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAC 975869 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || |||||||| |||| |||||||| ||| ||| Sbjct 975868 CAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTAC 975809 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||||||||||||| |||| || || | ||| | ||| Sbjct 975808 AACATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGC 975770 >seq5170 Length=6624210 Score = 132 bits (146), Expect = 5e-26 Identities = 233/336 (69%), Gaps = 5/336 (1%) Strand=Plus/Plus Query 139373 GGCCTGCACGGCTTCCACGTGCACGAGTTCGGCGACGCGAGCAACGGGTGCACGTCGGCC 139432 ||||||||||| |||||||| ||||||||||| ||| | |||||| |||| |||| || Sbjct 512307 GGCCTGCACGGATTCCACGTACACGAGTTCGGGGACAACACCAACGGCTGCATGTCGTCC 512366 Query 139433 GGCGAGCACTTCAACCCCGCGCGCCGGGACCACGGCGCGCCCGACGCCGAGATCAGGCAC 139492 || ||||||||| ||| || ||| ||||| || |||| || ||||| | | ||| Sbjct 512367 GGACCGCACTTCAATCCCTACGGCAAGGAGCACGGAGCTCCCGCCGACGAGAACCGTCAC 512426 Query 139493 GTCGGCGACCTGGGCAACCTCGAGTCGGCGGGCCGCGACGCGCTCACCGAGGTGAGCCTG 139552 | || |||||||||||| |||| ||| | ||||| | |||| |||| | | | Sbjct 512427 CTGGGAGACCTGGGCAACATCGA---GGCCACCGGCGACTGTCCCACCAAGGTCAACATC 512483 Query 139553 ACGGACGGCGTCG-TGTCCCTGTACGGTCCGCACAGCATCATCGGACGGAGTCTGGTCGT 139611 || ||| || | | | |||| ||| | ||||||||||||| || | | || || Sbjct 512484 ACCGAC-TCGAAGATCACGCTGTTCGGCGCCGACAGCATCATCGGGCGCACCGTTGTGGT 512542 Query 139612 GCACACGGACAGGGACGATCTGGGCCTCACCGACCATCCATTGAGCAAGACCACCGGCAA 139671 ||| | || || ||||| |||| | ||| |||||||| |||| || || Sbjct 512543 CCACGCCGATGCCGATGATCTCGGCCAGGGTGGCCACGAGCTGAGCAAGTCCACGGGAAA 512602 Query 139672 CTCGGGCGGCCGGCTCGCGTGCGGCATCATCGGGAT 139707 | | || | ||| | | |||||| ||||||| || Sbjct 512603 CGCAGGTGCCCGCATTGGCTGCGGCGTCATCGGCAT 512638 >seq5396 Length=9561034 Score = 127 bits (140), Expect = 2e-24 Identities = 159/218 (73%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || ||||||||||| |||||||| | || |||||| | Sbjct 8330848 AAGATGCAGATCTTCGTTAAGACCCTCACGGGCAAGACCATCACGCTTGAGGTCGAACCT 8330907 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | ||| |||| | || |||| |||||||| || || || | || Sbjct 8330908 TCGGATACTATCGAAAATGTCAAAGCCAAGATTCAGGACAAAGAAGGAATTCCTCCAGAT 8330967 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||||||| ||||| Sbjct 8330968 CAGCAGCGTCTGATCTTCGCTGGCAAGCAGCTGGAAGATGGCCGCACCCTCTCTGACTAT 8331027 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||| ||||||||| |||| |||| | ||| |||| Sbjct 8331028 AACATTCAGAAGGAGTCCACTTTGCACTTGGTGCTGCG 8331065 >seq5402 Length=10656099 Score = 118 bits (130), Expect = 1e-21 Identities = 152/207 (73%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||||||| || || || || || | || || || ||||| ||| | || || || || Sbjct 571868 AAAATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATTACCTTGGAGGTGGAGCCC 571809 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | || || | | |||| || || | ||||| |||||||||||| | || Sbjct 571808 TCCGACACGATTGAGAATG-TGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGA 571750 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || || |||| ||| ||||| || ||||| |||| || ||||| |||||| Sbjct 571749 TCAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTGTCCGACTA 571690 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 571689 CAACATCCAGAAGGAGTCGACCCTTCA 571663 Score = 105 bits (116), Expect = 7e-18 Identities = 150/206 (73%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || ||||| ||||||||| | || || || |||| | Sbjct 571637 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTGGAGGTGGA-GCCATC 571579 Query 40750 -GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| | |||| || || | ||||| ||||| || ||| | || | Sbjct 571578 TGACACCATCGAGAACG-TGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATC 571520 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || || |||| ||| ||||| ||||| || |||| ||||| || || |||| Sbjct 571519 AGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTTTCTGATTACA 571460 Query 40868 ACATCCAGAAGGAGGCCACGCTGCAT 40893 |||||||||||||| | || ||||| Sbjct 571459 ACATCCAGAAGGAGTCGACCTTGCAT 571434 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515183630554480