Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq5396 196 4e-45 seq5395 141 8e-29 seq5238 138 1e-27 seq5402 125 6e-24 seq5170 91.5 1e-13 >seq5396 Length=9561034 Score = 196 bits (216), Expect = 4e-45 Identities = 930/1466 (63%), Gaps = 45/1466 (3%) Strand=Plus/Plus Query 132879 TCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCAAATAATACATGCCCGTT 132938 || ||||| |||| |||| | || || || |||||||||| || ||||| || ||| Sbjct 8233762 TCCACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTCCAGTT 8233821 Query 132939 TTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCACCGAGTAAGTGGGTTCG 132998 || || | ||| | || ||||||||| || | || | || || Sbjct 8233822 TTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTGGCTCT 8233881 Query 132999 GCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAGCACGGTCGGCGGCCATG 133058 || ||| | || | ||| ||||||||||||||||| | | || || |||||||| Sbjct 8233882 GCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGCCATC 8233941 Query 133059 TTTATTATACACTTTGATTTGATCTCCCATGCCGTCTTGAAGAGATTCTTGACATGCTGT 133118 || || | |||| | ||| ||||| | || ||| | |||| ||| | ||| Sbjct 8233942 TTAATGGTCGACTTCACTGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCTTCTGG 8234001 Query 133119 GGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCCAAAATCTTGTTGCGCAATTCC 133178 || || | ||||| ||||| | || || | || | || | ||| || || Sbjct 8234002 GGGATGGCCTCAATATTCTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCATGTC- 8234060 Query 133179 GGAGTGTAA-ATGTCGAGATCGATTAGCGCTTTGACGAGATACTGGTTGACCACTTGAAA 133237 | || | | ||| || || |||| | | | | || ||||| |||||||| || Sbjct 8234061 GTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTGGAA 8234120 Query 133238 CTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTGAACGGTTCGAAAGATTCGTT 133297 ||||| | ||||| || ||| ||| | ||||| ||| |||| |||||||||||||| Sbjct 8234121 TTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAGATTCGTT 8234180 Query 133298 GTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTACGCCACCAACAAAGAGTTTCT 133357 |||||| | || || || || | ||| |||||||| ||| ||||||| ||||| | Sbjct 8234181 GTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGTTCCG 8234240 Query 133358 TACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAGTCCCACA-GATTGTTGGAAT 133416 || |||| || || ||| || || || | ||||||||| | | |||| || Sbjct 8234241 GACACCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTTGTCGG--- 8234297 Query 133417 GATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAAAATACCCCTGCTCACCGGAC 133476 | | | ||| | ||| | |||| ||| || ||||||| |||| Sbjct 8234298 -------------CACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGAC 8234344 Query 133477 TGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAGCTCGCAGCTAGCCTCCAAAG 133536 | || || | |||||| || |||| ||| | |||||| || || || || |||| | Sbjct 8234345 TTCCCTCATAGGTTTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGG 8234404 Query 133537 CGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAACCTGGCATCGTCGCTATCGT 133596 || | |||| |||||||| || | || | || | ||| || || || || | Sbjct 8234405 CGCCGTAGTAGATGGTTTCGAATATCTGCTGATTCAAGAGACCGGCTTCTTCACTTTCAT 8234464 Query 133597 AGGCGATGTCGAGAAGAACAAACGCGTCGGCCAAACCCTGTATGCCGACGCCGATGGGTC 133656 ||| || | ||||| | ||||| || || ||||| | |||| ||| | ||| | Sbjct 8234465 AGGGGAAACGCATAAGAATTAGGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGAC 8234524 Query 133657 GATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGATAGTGGTTGACGTCGATGATCT 133716 |||| | ||| ||| | ||| | | ||| ||| ||| | |||||||||| Sbjct 8234525 GATGCCTCAAGTTGGATTTCTTTGCCTCTGGCAGGGGGTAGAAGTTTATATCGATGATCT 8234584 Query 133717 TGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTCAG---CAAAACATAGTCAAATG 133773 |||| ||||| | | | || || | | || || | | || || ||| Sbjct 8234585 TGTTAAGATTCTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGT---ATG 8234641 Query 133774 TCTTGGCGTCGACGTCGACGCACTTGTTGACGGCAATACTGGCTAGATTACAAACGGCCG 133833 |||| || | || |||| || |||||| ||| || || | || || || || Sbjct 8234642 TCTTCTCG--GGAGT-GACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAA 8234698 Query 133834 TCTCGTTCTCGTCGCAATACTGGACGATCTCGGCGCAGAGGTTGCTGCATTTGATGGTGC 133893 |||||| | | | |||| ||||| || | ||| | ||||||||| |||||||||| Sbjct 8234699 TCTCGTCCGGAGAGGAGTACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGC 8234758 Query 133894 CCAAAtttttttGATTGCTAAAGTTATTGCAATGATCCTTGTATAGCATGTACGGCCCGC 133953 | | ||| | || ||||| | ||||| |||||| | |||||||| || | Sbjct 8234759 CGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTC 8234818 Query 133954 CGGTTTCGACGTTGGTCTCGACGATAAATCTAA--ACAAGTCTCTCGCCTTCACC-TGCC 134010 | |||||||| | | ||| | || | || ||||| | ||||| ||| | | Sbjct 8234819 CAGTTTCGACCTGTGCCTCAATAAT--GGCGAACCACAAGGATTGAGCCTTAACCGTTCG 8234876 Query 134011 TTTCGTACACTTGAGCATTT---TCGTAGTCGCAATATCTCATTTCGAAATCAAAACCGT 134067 || | || || | | | || || | ||| | ||||||| ||| || Sbjct 8234877 GTTGGCAC----GACCCTCTTGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCC 8234932 Query 134068 ATTTGTCGGCGAGGTCAGGGCATGTTTTGTGAGAGAATAGCGACCACATTTGATTGTTCT 134127 | ||| ||| |||||||| | | || | | ||| ||||| | |||| || Sbjct 8234933 ACACATCGTGAAGGCCAGGGCATTTATGCGGACACATTAGTGACCAATCTCCATTGGCCT 8234992 Query 134128 TTACGCGTTTCATGAATAGATCGGGAATCCACAGGCCGAGCATTAAATCGCGAGCTTTAG 134187 ||||| ||||| || |||||||| ||||||||| || | | |||||| || | Sbjct 8234993 CGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGAT 8235052 Query 134188 TGTCTTCGGAGCCCATGTTGCGTCTCAAGTT-GAGAAACTCATAAATTTCCGGATGCCAC 134246 | || || ||| |||| | ||| ||||| || |||||| | | |||| ||||| Sbjct 8235053 TCTCCTCCTTGCCGGTGTT-CTTCTTAAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAG 8235111 Query 134247 GGCTCGATGTAGGCGGCGAGGGCACCTTTTCGCTT---ACCACCCTGGTCGACGTGACGC 134303 ||||| | ||| ||| | |||||| ||||| || ||||| ||||| | ||| Sbjct 8235112 GGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCGACATAGCGC 8235171 Query 134304 ACCATGTTGTTGAAGACTCTCAACAT 134329 ||| ||||||||||| |||||||| Sbjct 8235172 GCCACATTGTTGAAGACCCTCAACAT 8235197 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||||||| | || ||||| || |||||||| || || | ||||| ||| Sbjct 8331063 CAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATC 8331004 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 || ||||| || |||||| |||| |||||||||||||| ||||| || || || ||||| Sbjct 8331003 TTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTC 8330944 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 ||| || ||| || | ||||| || |||| |||||||| | || | || Sbjct 8330943 CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGATGGT 8330884 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||| || || || || || || |||||||| Sbjct 8330883 CTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 8330851 >seq5395 Length=2659632 Score = 141 bits (156), Expect = 8e-29 Identities = 158/211 (75%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||||||| || ||||| ||||| Sbjct 975776 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTC 975835 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| |||| ||||||||||| || || || || ||||||||||| Sbjct 975836 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 975895 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || ||||| | |||| |||||| | | ||||||||| | ||| | || || Sbjct 975896 GATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 975955 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || || ||||| |||||| Sbjct 975956 GCCAGTCAGGGTCTTCACGAAAATTTGCATG 975986 Score = 129 bits (142), Expect = 5e-25 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 118529 CACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTC 118588 ||||||||||| || ||||| || || |||||||| ||| || ||||| ||||| Sbjct 975548 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 975607 Query 118589 GAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGT 118648 ||||| ||||| ||| |||| ||||||||||| || || || || ||||||||||| Sbjct 975608 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 975667 Query 118649 AATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTT 118708 || || || || | |||| ||| || | | ||||||||| | ||| | || || Sbjct 975668 GATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 975727 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| ||||| || || || || ||||||||| Sbjct 975728 GCCAGTCAGGGTCTTCACGAAGATCTGCATG 975758 >seq5238 Length=3592495 Score = 138 bits (152), Expect = 1e-27 Identities = 169/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| ||||||| | | ||||| ||||| || ||||| || || |||||||| ||| Sbjct 2679462 TACCACCGCGTAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 2679403 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 || ||||| ||||| ||||| || || ||| |||| |||||||||||||| || | Sbjct 2679402 ACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 2679343 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | |||||||||||||| || || || || | |||| |||||||| ||| | Sbjct 2679342 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCA 2679283 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||| | ||| | || |||||||| || ||||| || || || ||||||| Sbjct 2679282 CCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATGG 2679232 >seq5402 Length=10656099 Score = 125 bits (138), Expect = 6e-24 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 ||||| || | || ||||| || || ||||||||||| | |||||| |||||| Sbjct 571429 ACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCG 571488 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || ||| |||| |||||||||||||| || || || ||||||||||| Sbjct 571489 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGG 571548 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | |||| |||||| | ||| ||||| | ||| | || ||| Sbjct 571549 ATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGTCTTG 571608 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 ||||||| ||| || ||||| |||||||| Sbjct 571609 CCGGTCAAAGTCTTGACAAAGATCTGCAT 571637 Score = 105 bits (116), Expect = 6e-18 Identities = 157/222 (71%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || ||||| || || |||||||| ||| || || || ||||| Sbjct 571657 ACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCCTCC 571716 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 || || || || ||| |||| |||||||||||||| || || |||||||||||||| Sbjct 571717 AGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGG 571776 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||| | | ||| ||||| | ||| | || || Sbjct 571777 ATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGTCTTA 571836 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCA---TGGCTTATTCT 118748 || |||| || || ||||| ||||||| ||| ||||||| Sbjct 571837 CCAGTCAAGGTCTTCACAAAGATCTGCATTTTGGATTATTCT 571878 >seq5170 Length=6624210 Score = 91.5 bits (100), Expect = 1e-13 Identities = 112/152 (74%), Gaps = 6/152 (4%) Strand=Plus/Minus Query 47170 GCTTCAATGTTACCCAGATCGCCTACGTGACG---CTCGGCGGCGTTGGGAGCGCCGTGA 47226 || || ||||| ||||| || || | |||||| |||| ||||| ||||| ||||| Sbjct 512452 GCCTCGATGTTGCCCAGGTCTCCCAGGTGACGGTTCTCGTCGGCG---GGAGCTCCGTGC 512396 Query 47227 TTGCGGCCCAACGGATTATAGTGTTCGCCGGCCGACGTGCAGCCGTTGCTCGTGTCGCCG 47286 | ||| | ||||| |||| |||| |||| ||||||||||| | |||| ||| Sbjct 512395 TCCTTGCCGTAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTTGTCCCCG 512336 Query 47287 AATTCGTGCACGTGAAATCCGTGAAGCCCCTT 47318 || ||||| ||||| |||||||| || ||||| Sbjct 512335 AACTCGTGTACGTGGAATCCGTGCAGGCCCTT 512304 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433801198197916