Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq5402 114 1e-20 seq5395 105 8e-18 seq5376 95.1 1e-14 seq5238 95.1 1e-14 seq5170 93.3 5e-14 seq4505 93.3 5e-14 seq4488 91.5 2e-13 >seq5402 Length=10656099 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| |||| | ||| | ||||||||||| || |||||| || || |||||||||| Sbjct 571410 TCCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGA 571469 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| || |||| || |||||||| || ||||| || || |||||||| || | || Sbjct 571470 AAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 571529 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | | |||||||||| ||| || || | || | | ||||| | ||||| Sbjct 571530 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCAC 571589 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | |||||||| ||||| || | ||||| |||||||| ||||| Sbjct 571590 CTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637 >seq5395 Length=2659632 Score = 105 bits (116), Expect = 8e-18 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 42974 CACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATC 43033 |||||| || | ||| |||||| || || |||||||| | ||| || || |||| || Sbjct 975776 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTC 975835 Query 43034 TAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 43093 |||||||| || ||||| || || ||||||||||| | || | | |||||||||| Sbjct 975836 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 975895 Query 43094 GATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 ||| || || | || | | |||||| | || || || | |||||||| || Sbjct 975896 GATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 975955 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 ||| || || ||||| || || |||||||| || Sbjct 975956 GCCAGTCAGGGTCTTCACGAAAATTTGCATGTT 975988 Score = 98.7 bits (108), Expect = 1e-15 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||| Sbjct 337173 TTTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCA 337114 Query 60123 CTATACTACCGAGGATT 60139 |||||||| |||||||| Sbjct 337113 CTATACTATCGAGGATT 337097 Score = 96.9 bits (106), Expect = 4e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42968 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 43027 ||| | |||||| || | ||| |||||| || || ||||| || | ||| || || | Sbjct 975542 ACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCC 975601 Query 43028 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTT 43087 ||| || |||||||| || ||||| || || ||||||||||| | || | | |||||| Sbjct 975602 GTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTT 975661 Query 43088 GTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 |||| ||| || || | || | | || ||| | || || || | ||||| Sbjct 975662 GTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGAT 975721 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||| ||||| || || ||||| || ||||| ||||| Sbjct 975722 GGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 975757 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 336886 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 336827 Query 60124 TATACTACCGAGGAT 60138 ||||||| ||||||| Sbjct 336826 TATACTATCGAGGAT 336812 >seq5376 Length=10037194 Score = 95.1 bits (104), Expect = 1e-14 Identities = 70/81 (86%), Gaps = 2/81 (2%) Strand=Plus/Minus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||| Sbjct 4156231 TTCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCAC 4156172 Query 60124 TATACTACCGAGGA--TTGAA 60142 ||||||| |||||| ||||| Sbjct 4156171 TATACTATCGAGGACGTTGAA 4156151 Score = 93.3 bits (102), Expect = 5e-14 Identities = 71/83 (86%), Gaps = 1/83 (1%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4535509 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 4535568 Query 60126 TACTACCGAGGA-TTGAATATAT 60147 ||||| |||||| ||| | |||| Sbjct 4535569 TACTATCGAGGACTTGGAAATAT 4535591 Score = 93.3 bits (102), Expect = 5e-14 Identities = 69/80 (86%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4536607 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4536666 Query 60125 ATACTACCGAGGA--TTGAA 60142 |||||| |||||| ||||| Sbjct 4536667 ATACTATCGAGGACCTTGAA 4536686 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4534933 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4534874 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4534873 ATACTATCGAGGA 4534861 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 4536223 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 4536282 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 4536283 ATACTATCGAGGA 4536295 Score = 89.7 bits (98), Expect = 6e-13 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 4535140 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 4535199 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 4535200 TACTATCGAGGA 4535211 >seq5238 Length=3592495 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||| || || |||| || |||||||| || ||||| Sbjct 2679425 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 2679366 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || |||||||| || | || | || |||||||||| ||| || || | | Sbjct 2679365 GATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 2679306 Query 43112 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 43171 | | | ||||| | ||||| || | |||||||| ||||| || || || || || Sbjct 2679305 CTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCAC 2679246 Query 43172 AAAGATTTGCAT 43183 ||||||||||| Sbjct 2679245 GAAGATTTGCAT 2679234 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 682014 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 682073 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 682074 ATACTATCGAGGAT 682087 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 681723 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 681664 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 681663 ATACTATCGAGGA 681651 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 682567 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 682626 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 682627 TACTATCGAGGAT 682639 >seq5170 Length=6624210 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 422269 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 422328 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 422329 ATACTATCGAGGAT 422342 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 2504163 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 2504104 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 2504103 ATACTATCGAGGAT 2504090 >seq4505 Length=1357388 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1097447 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1097506 Query 60125 ATACTACCGAGGAT 60138 |||||| ||||||| Sbjct 1097507 ATACTATCGAGGAT 1097520 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 1295776 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 1295835 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 1295836 ATACTATCGAGGA 1295848 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1296027 CTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1295968 Query 60126 TACTACCGAGGAT 60138 ||||| ||||||| Sbjct 1295967 TACTATCGAGGAT 1295955 >seq4488 Length=490991 Score = 91.5 bits (100), Expect = 2e-13 Identities = 64/73 (88%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 166006 TCTCCCCGACGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 165947 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 165946 ATACTATCGAGGA 165934 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571778123142440