Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq5238 134 9e-27 seq5402 116 2e-21 seq5395 116 2e-21 seq5396 113 3e-20 >seq5238 Length=3592495 Score = 134 bits (148), Expect = 9e-27 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | ||||||||||| | || || ||||| ||||||||||||||| Sbjct 2679460 CCACCGCGTAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2679401 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| ||||||||| ||||| || || |||||||| || ||| Sbjct 2679400 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 2679341 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | || | || | | || || Sbjct 2679340 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 2679281 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| ||||||||||| |||||||| ||||| ||||| Sbjct 2679280 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234 >seq5402 Length=10656099 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | || |||| ||| | || || ||||| ||||||||||||||| Sbjct 571639 CCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 571698 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||||| ||||| || || |||||||| || ||| Sbjct 571699 AGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 571758 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || ||||||||| ||||| ||| | || | |||| |||| | || || Sbjct 571759 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACC 571818 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || | || ||||||||||||||||| Sbjct 571819 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 571865 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || ||||| | || |||| || || || || ||||| |||||||| || || Sbjct 571410 TCCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGA 571469 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | ||||||||| ||||| || || |||||||| || ||| Sbjct 571470 AAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 571529 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | ||||||||| ||||| ||| | | | || | || | | || || Sbjct 571530 AATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCAC 571589 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| |||||||| |||||||| | ||| || |||||||||||||| Sbjct 571590 CTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637 >seq5395 Length=2659632 Score = 116 bits (128), Expect = 2e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | ||||||| ||| | || || ||||| ||||||||||||||| Sbjct 975531 CCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 975590 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| |||| |||||| || ||||| || || ||||||||||| ||| Sbjct 975591 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 975650 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | || | ||||| | ||||| Sbjct 975651 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACC 975710 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||| ||||| || || || ||||| ||||||||||| Sbjct 975711 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCAT 975757 Score = 98.7 bits (108), Expect = 6e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 ||||||| ||| | || || ||||| |||||||| |||||||| || |||| Sbjct 975774 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCC 975833 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 |||| |||||| || ||||| || || ||||||||||| ||| | | ||||||||| Sbjct 975834 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 975893 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | || | || | |||| | ||||| || | |||||||| Sbjct 975894 TGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTC 975953 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||||| || || || ||||| || || ||||| Sbjct 975954 TTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 975985 >seq5396 Length=9561034 Score = 113 bits (124), Expect = 3e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || ||||| | |||||||| ||| ||||| || ||||| ||||| ||||| || Sbjct 8331077 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 8331018 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| | || |||| ||||||||| ||||| || || |||||||| || || Sbjct 8331017 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 8330958 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| ||||| ||||| | || | || | ||| | | |||||| Sbjct 8330957 ATTCCTTCTTTGTCCTGAATCTTG-GCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 8330899 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | ||||||||| ||||| ||||| || || || |||||||||||| Sbjct 8330898 CTCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATC 8330850 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323050253518880