Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_002667.1 Length=41834 Score E Sequences producing significant alignments: (Bits) Value seq1936 235 1e-57 >seq1936 Length=1051 Score = 235 bits (260), Expect = 1e-57 Identities = 506/742 (68%), Gaps = 22/742 (3%) Strand=Plus/Plus Query 18987 GGGACACTACATGATTTTCAAACTAAAAACCTTAATATGTGGCTTCAGCAAGATGTTGAT 19046 || ||||| | |||||||||| ||||||||||| ||||||| | ||| || Sbjct 133 GGCACACTCAACGATTTTCAAAACAAAAACCTTAACTTGTGGCTAGAACAATCGACCGAC 192 Query 19047 AGTTACTTAAATCTTGCTGATGTTGAAAAAGCTATTATTCCTGAATTTAGCATTCATG-- 19104 || | ||| || || |||| ||||| ||||||||| | |||||| || ||| Sbjct 193 AGCTTCTTGAAACTGCCTGACGTTGAGCGAGCTATTATATCATCATTTAGTTTTGATGAT 252 Query 19105 -GGCAACGCTGTTATATAGGTATTGACTATTCAATGATGTCAGATAATACAGCGATTGCT 19163 ||||| |||||| || |||| || || ||| | ||||| |||||| | || Sbjct 253 CGGCAA---GTTTATATTGGCTTTGATTACTCGATGTTTAGTGATAACACAGCGCTAGCG 309 Query 19164 TTCGTTTTTCCTTATTTAGATGATGAAGGAAAGCCTAAGTGGCATGTTGAACAGCATTCG 19223 || || ||||||||| ||| || | | || || ||| | || | |||||| Sbjct 310 TTTGTATTTCCTTATCGTGATAATAATGATAAACCACGATGGTTTATTTATCAGCATAGC 369 Query 19224 TTTGTTCCATTCCAAAGAGCAGGTTCAATTGATGCTAAAGAAAAACAAGATGGTATTAAT 19283 ||| |||| | || | ||| ||||||||||| ||||||||||| ||||| |||||||| Sbjct 370 TTTATTCCCTGGCAGAAAGCCGGTTCAATTGAGGCTAAAGAAAAGCAAGACGGTATTAAC 429 Query 19284 TATAGAGAACTAGAAAAATATGGTTTTTGTACAGTCACAAGCCACCAACAAGGGCTAATC 19343 ||| | || ||| || | || ||||||||| | | ||||| | ||||| |||||| Sbjct 430 TATCGGGACTTAGCTCAAAAGGGATTTTGTACAATTAGTAGCCATCCTCAAGGACTAATC 489 Query 19344 AATGATGATGAGGTCTATGAATGGATTGTAAACTATATTGA-AGATAACGCATTGGATGT 19402 ||||| || | || ||| | ||| | | |||| | |||| | | || | |||| || Sbjct 490 AATGACGAGCAAGTTTATCAGTGGTTACTTAACTTTGTTGAGCGGCATCG-ACTGGAAGT 548 Query 19403 TATCTTTTTTGGTTACGATGCAATGGG--TATC-ACTAAAGTAATTCAAATGCT-CATGA 19458 | | || |||||||| || || ||| || | ||| | | | || ||| || Sbjct 549 TGTTTTCTTTGGTTATGACGCGTGGGGGCTAACGCCTACAATCAAGCA---GCTAGATTT 605 Query 19459 ATAATACGGGCTATAATTTACAACCTATCCGTCAAAGAACGAGTGAGTTGAAAGATCCTA 19518 | ||| | || | || ||| | || || || |||| ||||| ||||| ||||| | Sbjct 606 A-AATTCCGGTTGGCCATTGCAAGCCATTCGGCAGCGAACTAGTGAATTGAAGGATCCAA 664 Query 19519 CAAAATTTTTACAAAAACTATTTGTAGAGGGATCTATTAGTAGGC-TAGATGATAAAATC 19577 | || ||||| || | | ||||| || || || ||| || | |||||| ||| Sbjct 665 CTAAGTTTTTGCAGACGATGTTTGTTGAAGGCTC-GGTAGACCGCTTGGATGATCGAATT 723 Query 19578 ATGGAAAAATCGCTATTAAATGCGG--TTTTACGTGAAGATTCAATAGGAATACAGGTAG 19635 |||||||| | || ||||||| | |||| |||||| ||| || || || || | Sbjct 724 ATGGAAAAGGCATTACTAAATGCTGAAATTTA--TGAAGACAAAATTGGTATTCAAGTCG 781 Query 19636 ATAAACGAAAAGCAACTTTAAAAATTGACGTTGTTGATGCGATTATTGATGCTTTATTTC 19695 ||||| || || || || || ||||| || || |||||| | |||||||| ||||||| Sbjct 782 ATAAAGCTAAGGCCACATTGAAGATTGATGTGGTAGATGCGTTAATTGATGCCTTATTTC 841 Query 19696 AAGGGATGTATCACTTTGAGGA 19717 | | |||||||||||||| || Sbjct 842 AGGCTATGTATCACTTTGAAGA 863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133738428106296