Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_002796.1 Length=40003 Score E Sequences producing significant alignments: (Bits) Value seq1936 235 1e-57 >seq1936 Length=1051 Score = 235 bits (260), Expect = 1e-57 Identities = 506/742 (68%), Gaps = 22/742 (3%) Strand=Plus/Plus Query 1635 GGGACACTACATGATTTTCAAACTAAAAACCTTAATATGTGGCTTCAGCAAGATGTTGAT 1694 || ||||| | |||||||||| ||||||||||| ||||||| | ||| || Sbjct 133 GGCACACTCAACGATTTTCAAAACAAAAACCTTAACTTGTGGCTAGAACAATCGACCGAC 192 Query 1695 AGTTACTTAAATCTTGCTGATGTTGAAAAAGCTATTATTCCTGAATTTAGCATTCATG-- 1752 || | ||| || || |||| ||||| ||||||||| | |||||| || ||| Sbjct 193 AGCTTCTTGAAACTGCCTGACGTTGAGCGAGCTATTATATCATCATTTAGTTTTGATGAT 252 Query 1753 -GGCAACGCTGTTATATAGGTATTGACTATTCAATGATGTCAGATAATACAGCGATTGCT 1811 ||||| |||||| || |||| || || ||| | ||||| |||||| | || Sbjct 253 CGGCAA---GTTTATATTGGCTTTGATTACTCGATGTTTAGTGATAACACAGCGCTAGCG 309 Query 1812 TTCGTTTTTCCTTATTTAGATGATGAAGGAAAGCCTAAGTGGCATGTTGAACAGCATTCG 1871 || || ||||||||| ||| || | | || || ||| | || | |||||| Sbjct 310 TTTGTATTTCCTTATCGTGATAATAATGATAAACCACGATGGTTTATTTATCAGCATAGC 369 Query 1872 TTTGTTCCATTCCAAAGAGCAGGTTCAATTGATGCTAAAGAAAAACAAGATGGTATTAAT 1931 ||| |||| | || | ||| ||||||||||| ||||||||||| ||||| |||||||| Sbjct 370 TTTATTCCCTGGCAGAAAGCCGGTTCAATTGAGGCTAAAGAAAAGCAAGACGGTATTAAC 429 Query 1932 TATAGAGAACTAGAAAAATATGGTTTTTGTACAGTCACAAGCCACCAACAAGGGCTAATC 1991 ||| | || ||| || | || ||||||||| | | ||||| | ||||| |||||| Sbjct 430 TATCGGGACTTAGCTCAAAAGGGATTTTGTACAATTAGTAGCCATCCTCAAGGACTAATC 489 Query 1992 AATGATGATGAGGTCTATGAATGGATTGTAAACTATATTGA-AGATAACGCATTGGATGT 2050 ||||| || | || ||| | ||| | | |||| | |||| | | || | |||| || Sbjct 490 AATGACGAGCAAGTTTATCAGTGGTTACTTAACTTTGTTGAGCGGCATCG-ACTGGAAGT 548 Query 2051 TATCTTTTTTGGTTACGATGCAATGGG--TATC-ACTAAAGTAATTCAAATGCT-CATGA 2106 | | || |||||||| || || ||| || | ||| | | | || ||| || Sbjct 549 TGTTTTCTTTGGTTATGACGCGTGGGGGCTAACGCCTACAATCAAGCA---GCTAGATTT 605 Query 2107 ATAATACGGGCTATAATTTACAACCTATCCGTCAAAGAACGAGTGAGTTGAAAGATCCTA 2166 | ||| | || | || ||| | || || || |||| ||||| ||||| ||||| | Sbjct 606 A-AATTCCGGTTGGCCATTGCAAGCCATTCGGCAGCGAACTAGTGAATTGAAGGATCCAA 664 Query 2167 CAAAATTTTTACAAAAACTATTTGTAGAGGGATCTATTAGTAGGC-TAGATGATAAAATC 2225 | || ||||| || | | ||||| || || || ||| || | |||||| ||| Sbjct 665 CTAAGTTTTTGCAGACGATGTTTGTTGAAGGCTC-GGTAGACCGCTTGGATGATCGAATT 723 Query 2226 ATGGAAAAATCGCTATTAAATGCGG--TTTTACGTGAAGATTCAATAGGAATACAGGTAG 2283 |||||||| | || ||||||| | |||| |||||| ||| || || || || | Sbjct 724 ATGGAAAAGGCATTACTAAATGCTGAAATTTA--TGAAGACAAAATTGGTATTCAAGTCG 781 Query 2284 ATAAACGAAAAGCAACTTTAAAAATTGACGTTGTTGATGCGATTATTGATGCTTTATTTC 2343 ||||| || || || || || ||||| || || |||||| | |||||||| ||||||| Sbjct 782 ATAAAGCTAAGGCCACATTGAAGATTGATGTGGTAGATGCGTTAATTGATGCCTTATTTC 841 Query 2344 AAGGGATGTATCACTTTGAGGA 2365 | | |||||||||||||| || Sbjct 842 AGGCTATGTATCACTTTGAAGA 863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 127879612385590