Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_003225.3
Length=309286
Score E
Sequences producing significant alignments: (Bits) Value
seq5267 122 2e-22
seq5396 114 3e-20
seq5165 93.3 8e-14
>seq5267
Length=4296760
Score = 122 bits (134), Expect = 2e-22
Identities = 293/441 (66%), Gaps = 7/441 (2%)
Strand=Plus/Minus
Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978
|||||||||| || || || || |||||||| || || ||||| ||||||||||||
Sbjct 668890 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGC 668831
Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038
| ||||| | ||| | |||| || || |||| |||||| ||| |||| || | ||||
Sbjct 668830 TGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTCATCTCCCGCGACG 668771
Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATACCCC 102096
| || || || |||||||||| | ||||| || || || || | ||||
Sbjct 668770 AGGGCCTGCACTGCGACTTTGC---CGTGCTGATGTTCCAGCACTTGGTGCAGCGACCCA 668714
Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156
| | || | || | || || || || || || || || || || || ||
Sbjct 668713 GGC--GCGAGCGCATCATCGAGATCATCCGCGATGCTGTGGCCATAGAGCAGGAGTTCCT 668656
Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216
||| | | || |||| || || | | || ||||| ||| | | ||| ||||||||
Sbjct 668655 CACCGATGCCTTGCCCGTAAACCTCATCGGCATGAATTGCGACCTCATGTCGCAGTACAT 668596
Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276
||||| ||||| ||| || |||| || |||| | | ||| ||| ||| |
Sbjct 668595 CGAATTCGTGGCGGATCGTCTGCTGGTGGAGCTGGGCGTTGGCAAGATCTACAATACCAA 668536
Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336
||||||||| |||||||| | || || || || ||||||||||| || || ||
Sbjct 668535 GAACCCCTTCAACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAACTTCTTCGAGAA 668476
Query 102337 GAGAGTCGCCGAGTATCAACG 102357
|| || | |||||| || ||
Sbjct 668475 GAAGGTGGGCGAGTACCAGCG 668455
>seq5396
Length=9561034
Score = 114 bits (126), Expect = 3e-20
Identities = 263/392 (67%), Gaps = 12/392 (3%)
Strand=Plus/Plus
Query 94168 ACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTG 94227
|| ||| |||||| ||||| || ||||| ||||| |||||| | || |||| | |
Sbjct 8234656 ACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAG 8234715
Query 94228 TACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTA 94287
|||| || ||||| |||||||| || |||||||| |||||||||| | |||||
Sbjct 8234716 TACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTG 8234775
Query 94288 GACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTCGATACGTGCA 94347
||| || ||| || ||||||||| || || || |||||||||||| ||||
Sbjct 8234776 CTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCC 8234835
Query 94348 GAATTAATTTGGTCGA---ATAATGCACGTGCCTTCACCACCTCTTTACCTTTGCCTTCA 94404
| |||| | ||| | || | | ||||| ||| || | || ||
Sbjct 8234836 TCAATAAT---GGCGAACCACAAGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTCT 8234892
Query 94405 GCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGG 94464
|||||| ||||| |||||| | || || ||||| || ||| ||||||||||
Sbjct 8234893 TGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGG 8234952
Query 94465 CACTCGTGGGGGCACATCAGGGACCAATTCTTCCCA---GCCTTCACTCTCTCCATGAAG 94521
|| | || || ||||| || |||||| ||| ||| |||| || | || ||| |||
Sbjct 8234953 CATTTATGCGGACACATTAGTGACCAA-TCT--CCATTGGCCTCGACGCGCTTCATAAAG 8235009
Query 94522 AGATCAGATACCCAGATAGCTGGGAAAAGATC 94553
||||| | || ||| | || ||| |||||
Sbjct 8235010 AGATCGGGTATCCACAGGGCGTAGAACAGATC 8235041
>seq5165
Length=2344106
Score = 93.3 bits (102), Expect = 8e-14
Identities = 278/424 (66%), Gaps = 10/424 (2%)
Strand=Plus/Minus
Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTT 35462
|||| || || ||||| ||||| |||||||| ||||| || || || | |||||
Sbjct 2002448 TGGGCCCGGTTTACGGCTTCCAGTGGCGTCACTTTGGGGCCGAGTACGGCACCTGCGACG 2002389
Query 35463 CCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA- 35521
|||||| | || ||||| || || || ||| | | | | | || | | ||||
Sbjct 2002388 ACGATTACAGCGGCAAGGGCATCGACCAGTTGCGCCAGGTGATCGACACGATCA-AGAAG 2002330
Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581
||||| || || | || || ||| |||| |||||||| | || | | |||
Sbjct 2002329 AATCCCTCGGACAGGCGCATCATCATGTCGGCCTGGAATCCCCTCGACATACCAAAGATG 2002270
Query 35582 GCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGT------GGCTAATGGAGAATT 35634
|| ||||| || |||||| || ||| | || || ||||| ||| || || |
Sbjct 2002269 GCCCTTCCGCCGTGCCAC-TGCCTGGCCCAGTTCTATGTCTCGCAGGCGCGCGGTGAGCT 2002211
Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694
|| |||||| |||| || | |||| || | || |||||||||||||||| || ||
Sbjct 2002210 CTCCTGCCAGCTGTACCAAAGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAACATCGC 2002151
Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTT 35754
|| ||| | || || || || |||| ||| | || ||| || || || || || ||
Sbjct 2002150 CTCCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGCCTGAAGCCCGGCGACTT 2002091
Query 35755 TATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCA 35814
| | | ||| | || ||| | ||| | ||| | |||| | ||| | ||| | ||||
Sbjct 2002090 TGTGCACACCATGGGCGACACGCACGTCTATCTGAACCACGTGGAGCCGCTAAGGGAGCA 2002031
Query 35815 GTTG 35818
| ||
Sbjct 2002030 GCTG 2002027
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 989513973634465
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |