Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq5267 122 2e-22 seq5396 114 3e-20 seq5165 93.3 8e-14 >seq5267 Length=4296760 Score = 122 bits (134), Expect = 2e-22 Identities = 293/441 (66%), Gaps = 7/441 (2%) Strand=Plus/Minus Query 101919 TTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGA 101978 |||||||||| || || || || |||||||| || || ||||| |||||||||||| Sbjct 668890 TTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGC 668831 Query 101979 TCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACG 102038 | ||||| | ||| | |||| || || |||| |||||| ||| |||| || | |||| Sbjct 668830 TGAAGAAGCGCGGTCTGATGCCGGGACTGACCTTCTCCAACGAGCTCATCTCCCGCGACG 668771 Query 102039 AAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTT--TGTTGATACCCC 102096 | || || || |||||||||| | ||||| || || || || | |||| Sbjct 668770 AGGGCCTGCACTGCGACTTTGC---CGTGCTGATGTTCCAGCACTTGGTGCAGCGACCCA 668714 Query 102097 ATCAAGAGAAAGGATTCTTGAAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCT 102156 | | || | || | || || || || || || || || || || || || Sbjct 668713 GGC--GCGAGCGCATCATCGAGATCATCCGCGATGCTGTGGCCATAGAGCAGGAGTTCCT 668656 Query 102157 CACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACAT 102216 ||| | | || |||| || || | | || ||||| ||| | | ||| |||||||| Sbjct 668655 CACCGATGCCTTGCCCGTAAACCTCATCGGCATGAATTGCGACCTCATGTCGCAGTACAT 668596 Query 102217 TGAATTTGTGGCAGATAAACTATTGGTTGAAATGGGACTAGAAAAGCACTATAATGTTAC 102276 ||||| ||||| ||| || |||| || |||| | | ||| ||| ||| | Sbjct 668595 CGAATTCGTGGCGGATCGTCTGCTGGTGGAGCTGGGCGTTGGCAAGATCTACAATACCAA 668536 Query 102277 CAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAA 102336 ||||||||| |||||||| | || || || || ||||||||||| || || || Sbjct 668535 GAACCCCTTCAACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAACTTCTTCGAGAA 668476 Query 102337 GAGAGTCGCCGAGTATCAACG 102357 || || | |||||| || || Sbjct 668475 GAAGGTGGGCGAGTACCAGCG 668455 >seq5396 Length=9561034 Score = 114 bits (126), Expect = 3e-20 Identities = 263/392 (67%), Gaps = 12/392 (3%) Strand=Plus/Plus Query 94168 ACAAACTTGTTGACTGCGATAGAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTG 94227 || ||| |||||| ||||| || ||||| ||||| |||||| | || |||| | | Sbjct 8234656 ACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAG 8234715 Query 94228 TACTGGACAATTTCAGTGCACAAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTA 94287 |||| || ||||| |||||||| || |||||||| |||||||||| | ||||| Sbjct 8234716 TACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTG 8234775 Query 94288 GACTTTCTATTGATGGTATCCTTAAAGCACACATAAGGTGTTCCAGTTTCGATACGTGCA 94347 ||| || ||| || ||||||||| || || || |||||||||||| |||| Sbjct 8234776 CTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCC 8234835 Query 94348 GAATTAATTTGGTCGA---ATAATGCACGTGCCTTCACCACCTCTTTACCTTTGCCTTCA 94404 | |||| | ||| | || | | ||||| ||| || | || || Sbjct 8234836 TCAATAAT---GGCGAACCACAAGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTCT 8234892 Query 94405 GCCTCATATTTCTCGTACAACGCCTTAAACTCTTCGCCATGGACGTCGGAAAGGCCAGGG 94464 |||||| ||||| |||||| | || || ||||| || ||| |||||||||| Sbjct 8234893 TGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGG 8234952 Query 94465 CACTCGTGGGGGCACATCAGGGACCAATTCTTCCCA---GCCTTCACTCTCTCCATGAAG 94521 || | || || ||||| || |||||| ||| ||| |||| || | || ||| ||| Sbjct 8234953 CATTTATGCGGACACATTAGTGACCAA-TCT--CCATTGGCCTCGACGCGCTTCATAAAG 8235009 Query 94522 AGATCAGATACCCAGATAGCTGGGAAAAGATC 94553 ||||| | || ||| | || ||| ||||| Sbjct 8235010 AGATCGGGTATCCACAGGGCGTAGAACAGATC 8235041 >seq5165 Length=2344106 Score = 93.3 bits (102), Expect = 8e-14 Identities = 278/424 (66%), Gaps = 10/424 (2%) Strand=Plus/Minus Query 35403 TGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGATACCTGTTCTT 35462 |||| || || ||||| ||||| |||||||| ||||| || || || | ||||| Sbjct 2002448 TGGGCCCGGTTTACGGCTTCCAGTGGCGTCACTTTGGGGCCGAGTACGGCACCTGCGACG 2002389 Query 35463 CCGATTATACTGGAAAGGGTATTGATCAATTGGCCAATATACTAAAGACCCTGAGAGAA- 35521 |||||| | || ||||| || || || ||| | | | | | || | | |||| Sbjct 2002388 ACGATTACAGCGGCAAGGGCATCGACCAGTTGCGCCAGGTGATCGACACGATCA-AGAAG 2002330 Query 35522 AATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCTATGGATCTTCACCTTATG 35581 ||||| || || | || || ||| |||| |||||||| | || | | ||| Sbjct 2002329 AATCCCTCGGACAGGCGCATCATCATGTCGGCCTGGAATCCCCTCGACATACCAAAGATG 2002270 Query 35582 GCTCTTCCTCCATGCCACATGACTG-CTCAATTTTATGT------GGCTAATGGAGAATT 35634 || ||||| || |||||| || ||| | || || ||||| ||| || || | Sbjct 2002269 GCCCTTCCGCCGTGCCAC-TGCCTGGCCCAGTTCTATGTCTCGCAGGCGCGCGGTGAGCT 2002211 Query 35635 GTCGTGCCAGTTGTATCAGCGAAGCGGAGATGTCGGGTTGGGCGTGCCCTTCAATATTGC 35694 || |||||| |||| || | |||| || | || |||||||||||||||| || || Sbjct 2002210 CTCCTGCCAGCTGTACCAAAGGAGCGCCGACATGGGCCTGGGCGTGCCCTTCAACATCGC 2002151 Query 35695 ATCATACTCTCTTCTGACTCATCTGATGGCCAGTATGGTGGGTCTAAAACCGGGAGAGTT 35754 || ||| | || || || || |||| ||| | || ||| || || || || || || Sbjct 2002150 CTCCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGCCTGAAGCCCGGCGACTT 2002091 Query 35755 TATCCTCACTCTTGGTGACGCACACATTTATAATACCCACATTGAGGTGTTAAAGAAGCA 35814 | | | ||| | || ||| | ||| | ||| | |||| | ||| | ||| | |||| Sbjct 2002090 TGTGCACACCATGGGCGACACGCACGTCTATCTGAACCACGTGGAGCCGCTAAGGGAGCA 2002031 Query 35815 GTTG 35818 | || Sbjct 2002030 GCTG 2002027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989513973634465