Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq5396 320 2e-82 seq5267 125 9e-24 >seq5396 Length=9561034 Score = 320 bits (354), Expect = 2e-82 Identities = 1200/1871 (64%), Gaps = 26/1871 (1%) Strand=Plus/Plus Query 62036 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 62095 ||| |||| ||||| ||||||| | || || || || || || ||||||||||| Sbjct 8233758 CTTATCCACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTCC 8233817 Query 62096 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 62155 ||||| ||||| |||| || || || || ||| ||||| ||| | || Sbjct 8233818 AGTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTGG 8233877 Query 62156 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 62215 ||||| | ||| || || | || ||||| ||||| ||||| ||||| | ||||| || Sbjct 8233878 CTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGC 8233937 Query 62216 CATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 62274 ||| || ||| ||| ||| || |||||||| | ||||| || | |||| | | Sbjct 8233938 CATCTTAATGGTCGACTTCACTGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCTT 8233997 Query 62275 CTTCTGGAAGGTTTG--TATTCTGAATGGATCCACCATCTACCA-TAATCCTATTCTTGA 62331 || ||| || | ||||||| || || || || || | | || ||||| | Sbjct 8233998 CTGGGGGATGGCCTCAATATTCTGGATTGAGCC-CCTGCTGGAAATGATTTGGTTCTTCA 8234056 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | || || | ||| || | ||| |||| | || | | ||| ||||||| |||| Sbjct 8234057 TGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTT 8234116 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 ||||||| ||||||| |||| || || |||||||| | || ||||| || | || | Sbjct 8234117 GGAATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAGATT 8234176 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 | || || |||| |||||| ||||| || ||||| |||||||| || ||||| | | Sbjct 8234177 CGTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGT 8234236 Query 62512 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 | | | ||||| || | |||| || || || | | ||| | |||||| | | | Sbjct 8234237 TCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTTGTC 8234295 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 62630 || || || || ||||| || || || || ||| |||| Sbjct 8234296 GGCACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGACTTCCCTCATAG 8234355 Query 62631 GTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACCGTAATAA 62690 || |||||||| || || ||| || |||| |||||| || || | || ||||| || Sbjct 8234356 GTTTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAG 8234415 Query 62691 ATGGTTTCAAAGATCTTCTTATTTA-GATCTTGTGCTTCCGGGCTATCAAATGGATAATT 62749 |||||||| || |||| || ||| | || | ||||| || ||| | || || Sbjct 8234416 ATGGTTTCGAATATCTGCTGATTCAAGAGACCG-GCTTCTTCACTTTCATAGGGGAAACG 8234474 Query 62750 TAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 62809 | ||||| | ||||| || ||||| || ||||| || || | || | ||| ||| Sbjct 8234475 CATAAGAATTAGGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAA 8234534 Query 62810 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 62869 || || | | || ||||| | || || | || ||||| || || || || ||||| Sbjct 8234535 GTTGGATTTCTTTGCCTCTGGCAGGGGGTAGAAGTTTATATCGATGATCTTGTTAAGATT 8234594 Query 62870 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCCCATCTA---T 62926 || || ||| || ||||| ||||| ||||| || | || | Sbjct 8234595 CTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGTCTTCTCGGGAGT 8234654 Query 62927 TACAAACATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTCATTAGCATCCGC 62986 || |||||||| | || | ||||||| || || || || | ||| | | | | Sbjct 8234655 GACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGA 8234714 Query 62987 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGATT 63046 || | | || || ||||| | || || |||||||| || || | ||| || || || Sbjct 8234715 GTACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTT 8234774 Query 63047 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 63106 ||||| |||| || ||||||||| | || ||| | || | |||||||| | ||| | Sbjct 8234775 GCTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGC 8234834 Query 63107 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATA-GATTTGTATCTCCTTTCTC 63165 || ||||| || ||| | | | ||||||| | | | || | | || ||| Sbjct 8234835 CTCAATAATGGCGAACCACAAGGATTGAGCCTTAACCGTTCGGTTGGCACGACC---CTC 8234891 Query 63166 TTTCGTATAGAGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCTAGG 63223 || | ||| |||||| |||||| || || ||||| |||| || | | ||| Sbjct 8234892 TTGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGG 8234951 Query 63224 ACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAG 63283 |||| || ||||||||| | ||||| ||||| | ||| || || ||||||||||| Sbjct 8234952 GCATTTATGCGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAG 8235011 Query 63284 ATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCCTCGTTTCCTGTATT 63343 ||| || ||||| || || || ||||| | | | || ||||| || || || || Sbjct 8235012 ATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTT 8235071 Query 63344 CTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCAT 63403 ||| ||||| || |||||| | | | || || ||||| || |||| ||| ||||| | Sbjct 8235072 CTTCTTAAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAA 8235131 Query 63404 AACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCT 63463 | || || || ||| ||||||||||| | || | || || || | || || Sbjct 8235132 GGCACCGGGACGCTTGCCGCCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCCT 8235191 Query 63464 CAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCCTCCACTGGC 63523 |||||| |||| | || || || | || || || ||| | || || || | || Sbjct 8235192 CAACATGGGAACCAGGCCATTGGAAGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTTGC 8235251 Query 63524 ACGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGC 63579 || || ||| || || || || || || ||| || ||||| | |||| Sbjct 8235252 TCGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCGAGATCATGGCGC 8235307 Query 63580 ATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGTTAAGTAGAAAAC 63639 | | | | | | | | ||||| || ||| || | ||||| | | || |||| Sbjct 8235308 ACTGCTCCACGGACTTAAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAAGAGGAAAC 8235367 Query 63640 AGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAA 63699 | |||| || | ||| | || | || ||| | || || || || || || | Sbjct 8235368 AAGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGCGTTGGCGACGCATGAGTGA 8235427 Query 63700 ACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAA 63759 | || || || | || || || || || | |||| ||||||||| | ||| | Sbjct 8235428 AGTATCGCTCCGACAAGAGGTTATAAGTTTCCACGGCTGCATCTATATCCTCTCCATGGA 8235487 Query 63760 TTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACAATTTTGTTGTTTATTT 63819 |||| | || || ||||| ||||| || || || | ||| | ||||| |||| | | Sbjct 8235488 TTCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCAGCGATTTTTCCGTTTCTCT 8235547 Query 63820 TCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTT 63879 ||| || ||||| ||| | || || || ||||||||||| || |||||| || | Sbjct 8235548 TCAGCAGATAGGAACGTTCGAGGGTCTTGAACCCAAAATAGTTATACCCAAAGTCGCGGT 8235607 Query 63880 CGTAAATAATA 63890 |||| || ||| Sbjct 8235608 CGTAGATTATA 8235618 >seq5267 Length=4296760 Score = 125 bits (138), Expect = 9e-24 Identities = 430/668 (64%), Gaps = 3/668 (0%) Strand=Plus/Plus Query 33282 ACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCCTTCCAAT 33341 |||||||| ||||| || ||||| || ||||| || || || || || |||| Sbjct 668446 ACTCCCATGCGCTGGTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGC 668505 Query 33342 GATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAAtttttttAAATCCCAAT 33401 || || | |||||||| | || || || | |||||| || || || |||| Sbjct 668506 GAGATCATCTCCATGAAGTTGAAGGGGTTCTTGGTATTGTAGATCTTGCCAACGCCCAGC 668565 Query 33402 TCAGAAATCAATCTATCTGCGACGAATTCTATATATGTTTTCATCATTTCACAATTCATT 33461 || | || | ||| || |||||||| || || ||| | || |||||||| Sbjct 668566 TCCACCAGCAGACGATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATG 668625 Query 33462 CCTATGAGTTTAACTGGAAGAGCCACAGTAAGAAATTCTTGTTCAATGGATACCGCATTT 33521 || ||||| || || || | || | || || || || || || |||| || |||| Sbjct 668626 CCGATGAGGTTTACGGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCG 668685 Query 33522 GTTATAATAAATCTAACGGTTTCTTCACTCGGTGGATGTAATAAATGTTTAAACATCAAA 33581 || || | | | || || ||| | || | || || | ||||||| Sbjct 668686 CGGATGATCTCGATGATGCGCTCGCGCCTGGGTCGCTGCACCAAGTGCTGGAACATCAGC 668745 Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || ||||||||||| |||||||| | || | ||||| || || || ||| Sbjct 668746 ACGGCAAAGTCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGT 668805 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 || ||||| || || ||||| || ||||| || ||||| ||||| ||| |||||| Sbjct 668806 CCCGGCATCAGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAG 668865 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGG-CGC--TGTCATGT 33758 || || || || || ||||||||||| | | ||| || | || ||| || Sbjct 668866 ATGCCCTCGACGGCGGCAAAGGCAATGATGCGCTCCCCGAAGTTGGCCGCCTTGGAGGAG 668925 Query 33759 ATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTA 33818 ||||| | ||||| || ||||| || ||| ||||| || || ||||| || Sbjct 668926 ATCCAGGAAAGGGCCCAGTCCGCCTTGCGCTTCACAGCGGGCATTGTCTCGATGGCGTTG 668985 Query 33819 AAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATT 33878 || || || | | | ||| | || || ||||||| | ||| ||||| Sbjct 668986 AACAGGTATTCGCGCTGGTGCGGATCCCGGATGTAGGTGTCGATCAGCACACTGTACATC 669045 Query 33879 TCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATC 33938 ||||| || | ||| || ||||| ||||| || || ||||| || | |||||| || ||| Sbjct 669046 TCCGAGTGCACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGCCTCCGTGATC 669105 Query 33939 TGCACTTC 33946 ||||| || Sbjct 669106 TGCACCTC 669113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629774118967440