Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq5396 347 2e-90 >seq5396 Length=9561034 Score = 347 bits (384), Expect = 2e-90 Identities = 1209/1878 (64%), Gaps = 24/1878 (1%) Strand=Plus/Plus Query 64829 CTTGTCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTCC 64888 ||| |||| ||||| ||||||| | || || || || || || ||||||||||| Sbjct 8233758 CTTATCCACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTCC 8233817 Query 64889 CGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCGG 64948 ||||| ||||| |||| || || || || ||| ||||| ||| | || Sbjct 8233818 AGTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTGG 8233877 Query 64949 ATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAGC 65008 ||||| | ||| || || | || ||||| ||||| ||||| ||||| | ||||| || Sbjct 8233878 CTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGC 8233937 Query 65009 CATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAAC-TCGCTTAATAT 65067 ||| || ||| ||| ||| || |||||||| | ||||| || | |||| | | Sbjct 8233938 CATCTTAATGGTCGACTTCACTGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCTT 8233997 Query 65068 CTTCTGGAAGGTTTG--TATTCTGAATGGATCCACCATCTGCCA-TAATCCTATTCTTGA 65124 || ||| || | ||||||| || || || || ||| | | || ||||| | Sbjct 8233998 CTGGGGGATGGCCTCAATATTCTGGATTGAGCC-CCTGCTGGAAATGATTTGGTTCTTCA 8234056 Query 65125 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 65184 | || || | ||| || | ||| |||| | || | | ||| | ||||| |||| Sbjct 8234057 TGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTT 8234116 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 | ||||| ||||||| |||| || || |||||||| | || ||||| || | ||| | Sbjct 8234117 GGAATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAGATT 8234176 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 | || || |||| |||||| ||||| || ||||| |||||||| || ||||| | | Sbjct 8234177 CGTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGT 8234236 Query 65305 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 | | | ||||| || | |||| || || || | ||| | |||||| | | | Sbjct 8234237 TCCGGACACCGTGCTGCT-TGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTTGTC 8234295 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTACGATCCTACATAT 65423 || || || ||||| || || || || ||| |||| Sbjct 8234296 GGCACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGACTTCCCTCATAG 8234355 Query 65424 GTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACCGTAATAA 65483 || || ||||| || || ||| || ||||||||||| || || | || ||||| || Sbjct 8234356 GTTTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAG 8234415 Query 65484 ATGGTTTCGAAGATCTTCTTATTTA-GATCTTGTGCTTCCAGGCTATCAAATGGATAATT 65542 ||||||||||| |||| || ||| | || | ||||| || ||| | || || Sbjct 8234416 ATGGTTTCGAATATCTGCTGATTCAAGAGACCG-GCTTCTTCACTTTCATAGGGGAAACG 8234474 Query 65543 TAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTATGTCTCTT 65602 | ||||| | ||||| || ||||| || ||||| || || | || | ||| ||| Sbjct 8234475 CATAAGAATTAGGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAA 8234534 Query 65603 ATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTATTGAGATT 65662 || || | | || ||||| | || || | || ||||| || || || || ||||| Sbjct 8234535 GTTGGATTTCTTTGCCTCTGGCAGGGGGTAGAAGTTTATATCGATGATCTTGTTAAGATT 8234594 Query 65663 TCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAATCGCTCATCTA---T 65719 || || ||| || ||||| ||||| ||||| || || || | Sbjct 8234595 CTTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTATGTCTTCTCGGGAGT 8234654 Query 65720 TACAAACATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGC 65779 || |||||||| | || | ||||||| || || || || | ||| | | | | Sbjct 8234655 GACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGA 8234714 Query 65780 ATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATT 65839 || | | || || ||||| | || || ||||||||||| || | ||| || || || Sbjct 8234715 GTACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTT 8234774 Query 65840 ACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGA 65899 ||||| |||| || ||||||||| | || ||| | || | |||||||| | ||| | Sbjct 8234775 GCTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGC 8234834 Query 65900 TTCTATAATCGCTTTCCAGACGACTCGAGCCTTTATTATAGATTTGTATCTCTTTTCTCT 65959 || ||||| || ||| | | | ||||||| | | ||| | | |||| Sbjct 8234835 CTCAATAATGGCGAACCACAAGGATTGAGCCTTAACCGTTCGGTTGG--CACGACCCTCT 8234892 Query 65960 TTCGTATAGTGT--ATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATCCAGGA 66017 | | ||| | |||||| |||||| || || ||||| |||| || | ||||| Sbjct 8234893 TGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGG 8234952 Query 66018 CATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGA 66077 |||| || ||||||||| | ||||| ||||| | ||| || || |||||||||||| Sbjct 8234953 CATTTATGCGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGA 8235012 Query 66078 TCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTC 66137 || || ||||| || || || | ||| | || | || ||||| || || || ||| Sbjct 8235013 TCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTC 8235072 Query 66138 TTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTCCAAGTATATGGCCATA 66197 || ||||| || |||||| | | | || | ||||| || |||| ||| ||||| | Sbjct 8235073 TTCTTAAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAG 8235132 Query 66198 ACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTC 66257 | || || || ||| ||||||||||| | || | || || || | || ||| Sbjct 8235133 GCACCGGGACGCTTGCCGCCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCCTC 8235192 Query 66258 AACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCA 66317 ||||| |||| | |||||||| || || || || ||| | || || | || |||| Sbjct 8235193 AACATGGGAACCAGGCCATTGGAAGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTTGCT 8235252 Query 66318 CGAATATTACTAATTGA----TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCA 66373 || || ||| || || || || || || ||| || ||||| | ||||| Sbjct 8235253 CGGAT----GCAATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCGAGATCATGGCGCA 8235308 Query 66374 TCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACA 66433 | | | | | | | |||||||| || || | ||||| | | || ||||| Sbjct 8235309 CTGCTCCACGGACTTAAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAAGAGGAAACA 8235368 Query 66434 GCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGCGTAAA 66493 |||| || | ||| | || | || ||| | || || || || || || || Sbjct 8235369 AGACGACAGCTGCGGGCGATTTGTGGCAGCGGCAAAAAGCGTTGGCGACGCATGAGTGAA 8235428 Query 66494 CCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTATATCCCATTGATGAAT 66553 || || || | || || || || || | |||| ||||||||| | ||| || Sbjct 8235429 GTATCGCTCCGACAAGAGGTTATAAGTTTCCACGGCTGCATCTATATCCTCTCCATGGAT 8235488 Query 66554 TCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTT 66613 ||| | || || ||||| ||||| || || || | ||| |||| || |||| | || Sbjct 8235489 TCCGATCGCCACGCGCATCAACATATGTTGCGGACGCTCAGCGATTTTTCCGTTTCTCTT 8235548 Query 66614 CAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTC 66673 || || ||||| ||| | || || || ||||||||||| || |||||| || || Sbjct 8235549 CAGCAGATAGGAACGTTCGAGGGTCTTGAACCCAAAATAGTTATACCCAAAGTCGCGGTC 8235608 Query 66674 GTAAATAATAACCGAGTT 66691 ||| || ||| ||||| Sbjct 8235609 GTAGATTATAGAAGAGTT 8235626 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658127361395320