Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq5396 123 2e-23 seq5402 105 7e-18 seq5238 104 2e-17 >seq5396 Length=9561034 Score = 123 bits (136), Expect = 2e-23 Identities = 469/729 (64%), Gaps = 19/729 (3%) Strand=Plus/Plus Query 153625 TGTTGACGGCAATCGACGCCAAGTTGCAAACGGCAGTTTCGTCGGGGGCGCAATATTGTA 153684 |||||| ||| || || ||||||||||| || ||| | ||||| || | | | || | | Sbjct 8234663 TGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCA 8234722 Query 153685 CTATTTCCGCACACAAATTGCTGCATTTTATCAGGCCGCAATTACTTTGATTGCTTTTGC 153744 | ||||| | ||||| |||||||| || || |||| ||| || ||||| || | Sbjct 8234723 CGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCC 8234782 Query 153745 GGTTACAAGCGTCCTTGTATAGCATGTATGGTGTGCCGGTTTCGGCTTGAATTTCTATAA 153804 ||| || || ||||| | |||||||| || | || |||||| | || || |||| Sbjct 8234783 TGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAA 8234842 Query 153805 TAGTACGCATCAATG--TGA-CCGCGGGCATTTGATCGCGAAACTGGCCCTTGTCTTCGT 153861 | | | ||| | ||| || | || | | | | | |||| | || | Sbjct 8234843 TGGCGAACCACAAGGATTGAGCCTTAACCGTTCGGTTGGCA---CGACCCTCTTGCTCAT 8234899 Query 153862 AGTGTTTGTACCAGTATTCAAACTCATCACCAAACGTATTGTTAAGCTCGGGACATTCGT 153921 | | | ||| | | ||| || ||||| || || || || ||| | || |||| | Sbjct 8234900 ACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGGCATTTAT 8234959 Query 153922 TGGGACACATCAGTGACCATCGGCCATTTTCTTGAACGCGACGCATAAATATATCGGGAA 153981 |||||||| |||||||| ||||| | | ||||| |||||| | |||||| | Sbjct 8234960 GCGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTA 8235019 Query 153982 CCCATAGGGCGTTCATCAGGTCGCGCGCTTTCGTGTCTTCGCTGCCAATGTTTCGACGCA 154041 ||| ||||||| | ||| ||||| || | || || |||| || ||| | | Sbjct 8235020 TCCACAGGGCGTAGAACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTG-TTCTTCTTA 8235078 Query 154042 TG-TGTAAGACGTCCATTATGTCGCAATGCCACGGTTCCACGTAAACTGCTTGAGCGCCT 154100 | | | || || | | ||| | ||||| || |||| ||||| || || || Sbjct 8235079 AGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCG 8235138 Query 154101 TTACGCTTGCCG---CCCTGATTTACGTGACGCACCATATTGTTGAAAACCCGAAGCATG 154157 |||||||||| ||||||| || | ||| ||| ||||||||| |||| | |||| Sbjct 8235139 GGACGCTTGCCGCCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCCTCAACATG 8235198 Query 154158 GGTAGCAGACCGCTGGCGGTACCGTTTGTAGATTTAATCTTGCTG----TTGCGGCCTCG 154213 || | ||| || ||| || ||||| || |||| | || ||| |||| Sbjct 8235199 GGAACCAGGCCATTGGAAGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTTG----CTCG 8235254 Query 154214 AACGCTGTTTACGTTTAATCCAATACCGCCGCCGTGTTTGGAGATCATGGCGCAATCGTT 154273 | || | ||||| | |||||| |||||| | || |||||||||||||| | | Sbjct 8235255 GATGCAATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCGAGATCATGGCGCACTGCTC 8235314 Query 154274 CAATGTGTTATAGATACCACGAATGCTATCGCTTTCCATGGTCAATAGGAAACATGAACT 154333 || | ||| | || || ||| ||| | ||||||||| |||||||| || Sbjct 8235315 CACGGACTTAAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAAGAGGAAACAAGACGA 8235374 Query 154334 CATCTGCGG 154342 || |||||| Sbjct 8235375 CAGCTGCGG 8235383 Score = 109 bits (120), Expect = 5e-19 Identities = 169/238 (71%), Gaps = 4/238 (2%) Strand=Plus/Minus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||||| || ||||| | || ||||| || ||||||||||| || Sbjct 8331077 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 8331018 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||||| ||||| || ||||| |||||||||| |||||||| ||||| Sbjct 8331017 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 8330958 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | || | ||| | | ||| | || || | || || || Sbjct 8330957 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 8330899 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATAGCTTATGTT 139774 ||||| || | |||||||| || | || || ||||| || ||||| ||| |||| Sbjct 8330898 CTCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT--CTTGTGTT 8330843 >seq5402 Length=10656099 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || ||||| | ||| | ||| || || | || ||||| || || ||||| ||||| Sbjct 571411 CCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAA 571470 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| |||||||| || || || |||||||||| |||||||| || || Sbjct 571471 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 571530 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || || || ||||| ||| || || | | || | ||||| | ||||||||| Sbjct 571531 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACC 571590 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | ||| | |||||||||||||| || || || || || |||||| Sbjct 571591 TCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 571638 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || ||||| || || ||||| || ||| | Sbjct 571639 CCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 571698 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | ||| || || || || || || |||||||||| |||||||| || || Sbjct 571699 AGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 571758 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 ||||| || ||||| ||| || || | | || | ||||||| |||||||||| Sbjct 571759 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACC 571818 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 || | ||| | ||||| || ||||| || || || || || ||||| Sbjct 571819 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 571865 >seq5238 Length=3592495 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 || ||||| || || ||||| || ||| || |||| ||| || ||||| || || Sbjct 2679430 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCG 2679371 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT 139687 || |||||||||| |||||||| || || ||||| || ||||| ||| || || Sbjct 2679370 GCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 2679311 Query 139688 AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGTT 139747 | | || | ||||| | ||||||||||| | ||| | ||||||||||| | ||| Sbjct 2679310 ACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTT 2679251 Query 139748 TTTACGAATATTTGCAT 139764 || ||||| |||||||| Sbjct 2679250 TTCACGAAGATTTGCAT 2679234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496029752981600