Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq5396 93.3 4e-14 seq5402 82.4 8e-11 >seq5396 Length=9561034 Score = 93.3 bits (102), Expect = 4e-14 Identities = 120/165 (73%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 ||||| || || || ||||| |||||||||| |||||||| ||||| || ||||||||| Sbjct 8331005 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 8330946 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || ||| || ||| | | ||| | || |||| ||||| || |||| || | Sbjct 8330945 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGATG 8330886 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATAGCTTATGTT 143194 |||||||| || | || || ||||| || ||||| ||| |||| Sbjct 8330885 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT--CTTGTGTT 8330843 >seq5402 Length=10656099 Score = 82.4 bits (90), Expect = 8e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || ||||| | ||| | ||| ||||| | || || || || || ||||||||||| Sbjct 571411 CCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAA 571470 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| ||||| || || || || |||||||||| |||||||| || || Sbjct 571471 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 571530 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| || || || | | || | ||||| | || || || Sbjct 571531 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACC 571590 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | |||||||||||||| || || || || || |||||| Sbjct 571591 TCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 571638 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506979396993360