Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq5267 309 4e-79 seq1455 235 8e-57 seq5165 156 6e-33 seq5396 134 2e-26 >seq5267 Length=4296760 Score = 309 bits (342), Expect = 4e-79 Identities = 584/852 (69%), Gaps = 38/852 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 ||||| ||||||| || ||||| || || ||||| ||||| |||||||||||| ||| | Sbjct 669280 AGGCTGAGGCCTCTTTCTGGACCGTGGAGGAGGTGGATCTCTCCAAGGACCTGACCGACT 669221 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCGCACATTTTGGCCTTCTTTG 125157 || | || ||| || ||||| | || || |||||| | |||||||||| | Sbjct 669220 GGCAC---CGCCTGAAGGACGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCG 669164 Query 125158 CCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTGACCA 125217 ||| ||||||||| ||||| ||||| || ||| | || ||| || ||| || | Sbjct 669163 CCGCCTCCGATGGCATCGTTAACGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTGCAGA 669104 Query 125218 TTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCGGAA 125276 | | |||| ||| ||||| || || ||||| ||| || ||||||||||||||||| Sbjct 669103 TCACGGAGGC-TCGCTGCTTCTATGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAG 669045 Query 125277 ATGTACTCTACACTGATTGACATGTACATTCGCGATCCG---CAACGTAAACACATGCTC 125333 |||||| | ||||| |||| ||||| || |||||| || || || || || Sbjct 669044 ATGTACAGTGTGCTGATCGACACCTACATCCGGGATCCGCACCAGCGCGAATAC---CTG 668988 Query 125334 TTTAACGCAATCGACACGGTGCCGTCTATACGTAAA----AAGGCTCAATGGGTGATTCG 125389 || ||||| ||||| || |||| || || || ||||| | |||| || Sbjct 668987 TTCAACGCCATCGAGACAATGCCCGCT----GTGAAGCGCAAGGCGGACTGGGCCCTTTC 668932 Query 125390 GTGGATCGATGACGACAAGTCTTC---GTACGCCGACAGACTGGTGGCATTCGCCGCCGT 125446 |||||| | |||| | | | || || | | | || || |||||||| Sbjct 668931 CTGGATC---TCCTCCAAGGCGGCCAACTTCGGGGAGCGCATCATTGCCTTTGCCGCCGT 668875 Query 125447 AGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGGCTCAAGAAGCGCGGACT 125506 |||||||||||||| || || || || |||| || ||||| ||||||||||| || Sbjct 668874 CGAGGGCATCTTCTTCAGCGGCAGCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCT 668815 Query 125507 CATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGACGAGGGCCTACACTGTGA 125566 ||||| |||||||| | |||||| | || || || ||||||||||| ||||| || Sbjct 668814 GATGCCGGGACTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGA 668755 Query 125567 CTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAGTGCA--GATCCAGCGATGAA 125624 ||||||| | || |||| | ||| || ||||| || |||| || Sbjct 668754 CTTTGCCGTGCTGATGTTCCAGCACT---TG--------GTGCAGCGACCCAGGCGCGAG 668706 Query 125625 AAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAGAGTTTCTAACCGAATCC 125684 ||||| | || | |||||| ||| ||||| || ||||| || ||||| || Sbjct 668705 CGCATCATCGAGATCATCCGCGATGCTGTGGCCATAGAGCAGGAGTTCCTCACCGATGCC 668646 Query 125685 CTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCGAGTACATAGAGTTTGTG 125744 | || || | | | || |||||||| ||| | || |||| ||||||| || || ||| Sbjct 668645 TTGCCCGTAAACCTCATCGGCATGAATTGCGACCTCATGTCGCAGTACATCGAATTCGTG 668586 Query 125745 GCAGATCGTCTACTGTACGAGTTGATTGGCCGCAAGATTTACAACGCCAAGAATCCCTTT 125804 || |||||||| ||| ||| || | ||||||| ||||| ||||||| ||||| Sbjct 668585 GCGGATCGTCTGCTGGTGGAGCTGGGCGTTGGCAAGATCTACAATACCAAGAACCCCTTC 668526 Query 125805 GATTTCATGACCAGCATATCACTAGAGGGTAAGACCAACTTTTTCGAGAAGAAGGTCAGC 125864 | |||||| | || || || || || ||||||||||| |||||||||||||| || Sbjct 668525 AACTTCATGGAGATGATCTCGCTGGACGGCAAGACCAACTTCTTCGAGAAGAAGGTGGGC 668466 Query 125865 GAGTACAAACGC 125876 |||||| | ||| Sbjct 668465 GAGTACCAGCGC 668454 >seq1455 Length=1567854 Score = 235 bits (260), Expect = 8e-57 Identities = 398/574 (69%), Gaps = 22/574 (4%) Strand=Plus/Plus Query 127102 TTGCGGTAAAAGATGACTCCGGCTCGAGGACCTCTGAGAGTCTTGTGCGTTGTAGTGGTC 127161 |||||| | ||||| || ||||| || ||||| | || ||||||||||| || |||||| Sbjct 986401 TTGCGGAAGAAGATCACGCCGGCGCGCGGACCACGCAGCGTCTTGTGCGTGGTGGTGGTC 986460 Query 127162 ACAATGTCACAATACTCAAAGGGGCCAGGAATGACTTTGCCCGCAATCAAGCCCGCAATG 127221 || ||||| ||||| ||||| ||||| | | | || | | |||||| | Sbjct 986461 ACGATGTCGGCGTACTCGAAGGGCGAGGGAATCAGGCCGGCGGCCACTATGCCCGCCACA 986520 Query 127222 TGTGCAATATCGGCCATCAGCAAGGAGCCGGCTGCATCGGCAATCTCTCGGAATCGTCTA 127281 || || || ||||||||||| ||| ||| | ||||| |||| ||||| || Sbjct 986521 TGGGCCATGTCGGCCATCAGGTAGGCGCCCACGTCATCGCAGATCTGGCGGAAGCGGGCG 986580 Query 127282 TAGTCCAAGCGCCGAGGATAGCAACTGGTGCCGGCTATGATTAGCCTAGGTTTGAATAGA 127341 ||||||| |||| | ||||| | ||||||| ||||| | | || ||| Sbjct 986581 TAGTCCAGCAGCCGGGAGTAGCACGAGATGCCGGCAATGATGATCTGCGGCCGGAAGGTC 986640 Query 127342 TTGGCACTCTCGGCAAGTTTGGCATAGTCGACGAGTCCAGTCTGAGGATCCACCTTGTAC 127401 ||||| ||| || || ||| | ||||||| || || |||| || | |||||||||| Sbjct 986641 TTGGCCGCCTCCGCCAGCTTGTCGTAGTCGATGATGCCCGTCTCCGGGTTCACCTTGTAC 986700 Query 127402 GGCATGCTTTCGAAAAAGAGTGATGTAGCGGACACGTT--------GCG----GAATCCG 127449 |||||||| ||||| |||| || || || || | || ||| ||| ||| Sbjct 986701 GGCATGCTCTCGAAGAAGATCGACGTGGCCGAGATCTTCTTGGTGGGCGTGAAGAAGCCG 986760 Query 127450 TGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGGTTTAACG 127509 || ||||||||||| ||||||||||| || || |||||||| | |||| || ||| Sbjct 986761 TGGGTCAGGTGGCCGCCGTCGGGCAGGTCCAGGCCCATGATCCGGTCGTGGGG----ACG 986816 Query 127510 ----ATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACACAC 127565 | || ||||| ||||| | ||||||| |||||| ||||| || || ||| ||| Sbjct 986817 GCACACGCCCGTGTAGACGGCCAGGTTGGCCGGCGAGCCGGAGTAGGGCTGCACATTCAC 986876 Query 127566 TCCCCATTCGGACTCGTTCAAATTGAAC-GCTCTGAGACATCGCTGCTGTGCTAGCAGTT 127624 ||||| | | |||| || |||||| |||| | | | |||| ||| || ||||| | Sbjct 986877 GCCCCACTTGTCCTCGGCCAGGTTGAACAGCTC-GCGGCCCCGCTTCTGGGCGAGCAGCT 986935 Query 127625 CGATGCGATCGATAAACTCGTTACCACCATAGTA 127658 | | ||| ||||| |||||||| || || ||||| Sbjct 986936 CCACGCGGTCGATGAACTCGTTGCCGCCGTAGTA 986969 >seq5165 Length=2344106 Score = 156 bits (172), Expect = 6e-33 Identities = 318/464 (69%), Gaps = 14/464 (3%) Strand=Plus/Minus Query 70067 GGCGATCTGGGGCCAGTGTACGGATTCCAGTGGAGGCACTCGGGCACCAAGTATGTAGAC 70126 ||||| ||||| || || ||||| ||||||||| | |||| || || |||| | | Sbjct 2002455 GGCGACCTGGGCCCGGTTTACGGCTTCCAGTGGCGTCACTTTGGGGCCGAGTACGGCACC 2002396 Query 70127 TGCGA-GACAGACTATTCGGGTCAGGGTGTTGATCAATTGCAGACAA-TCATTGACACTC 70184 ||||| ||| || || || |||| | || || |||| | || | || ||||| Sbjct 2002395 TGCGACGAC-GATTACAGCGGCAAGGGCATCGACCAGTTGC-GCCAGGTGATCGACACGA 2002338 Query 70185 TCAAGACCAATCCAACAGATAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGC 70244 |||||| ||||| | || ||| | ||| | |||| | |||||||| || | Sbjct 2002337 TCAAGAAGAATCCCTCGGACAGGCGCATCATCATGTCGGCCTGGAATCCCCTCGACAT-- 2002280 Query 70245 ACCAAA--TGGCACTACCACCGTGTCACTGTTTGGCTCAGTTTTA---CTCGTACGATGG 70299 |||||| |||| || || ||||| ||||| |||| ||||| || |||| | | | Sbjct 2002279 ACCAAAGATGGCCCTTCCGCCGTGCCACTGCCTGGCCCAGTTCTATGTCTCGCAGGCGCG 2002220 Query 70300 CA---AATTGTCATGCTTAATGTATCAGAGGAGTGCCGACATGGGCCTCGGTGTACCCTT 70356 | | | || ||| |||| || ||||| |||||||||||||| || || ||||| Sbjct 2002219 CGGTGAGCTCTCCTGCCAGCTGTACCAAAGGAGCGCCGACATGGGCCTGGGCGTGCCCTT 2002160 Query 70357 TAACATTGCAAGCTATTCTATGTTGACGCACATGATTGCTCACATTACCGGCCTGAAAGC 70416 ||||| || ||| | || | || |||||||| || || | || |||||||| | Sbjct 2002159 CAACATCGCCTCCTACGCCCTGCTCACCCACATGATCGCCCATGTGACGGGCCTGAAGCC 2002100 Query 70417 GCACGAGTTCGTACACACCATTGGCGACGCTCACGTGTATTTAAATCACATCGAGCCATT 70476 ||| || || |||||||| |||||| | ||||| ||| | || ||| | ||||| | Sbjct 2002099 CGGCGACTTTGTGCACACCATGGGCGACACGCACGTCTATCTGAACCACGTGGAGCCGCT 2002040 Query 70477 AAAGGTGCAACTCGAACGGGAGCCGAGACCTTTTCCCAAGCTGG 70520 || || ||| || || || |||| | || || |||||||||| Sbjct 2002039 AAGGGAGCAGCTGGAGCGCACGCCGCGGCCCTTCCCCAAGCTGG 2001996 >seq5396 Length=9561034 Score = 134 bits (148), Expect = 2e-26 Identities = 930/1486 (63%), Gaps = 52/1486 (3%) Strand=Plus/Minus Query 96807 ACAAACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGT--CAC 96864 || ||||||| ||| |||||| || || ||| | || | | ||| |||||| | | Sbjct 8235227 ACGAACGGCACTTCCAATGGCCTGGTTCCCATGTTGAGGGTCTTCAA--CAATGTGGCGC 8235170 Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 | || || ||||| ||| || || || || || | ||| | ||| |||| || | Sbjct 8235169 GCTATGTCGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCT 8235110 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| ||||||| ||||| || | || | || ||| | ||| || ||| | Sbjct 8235109 GGCACTCGGACGTCTTTGAGTTCCTGGAACTTAAGAAGAACACCGGCAAGGAGGAGAATC 8235050 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACG 97044 | ||| | || |||| || || || ||| | || ||| | || |||||||||||| | | Sbjct 8235049 GCGCCCGCGATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGG 8234990 Query 97045 ACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGG 97104 | ||| | ||| |||||||| || | | || || || |||| |||| Sbjct 8234989 CCAATGGAGATTGGTCACTAATGTGTCCGCATAAATGCCCTGGCCTTCACGATGTGTGGG 8234930 Query 97105 GCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAG 97164 |||| || || || ||| | || ||||||||||| || | || | Sbjct 8234929 GCGATGAATTCGAAAAGTTGTATGAGAAGTATGAGCAAGAGGGTCGTGCCAACCGAACGG 8234870 Query 97165 TCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGT 97224 | | || | | ||||| ||||| | ||| ||||| || ||||||| || | Sbjct 8234869 TTAAGGCTCAATCCTTGTGGTTCGCCATTATTGAGGCACAGGTCGAAACTGGAAACCCCT 8234810 Query 97225 ACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACCATCA 97284 |||| || | |||||| || || | || |||||||| | | | |||||||||| Sbjct 8234809 ACATGCTGTTTAAGGATGCCTGCAACAGGAAGAGCAACCAGCAGAATGTCGGCACCATCA 8234750 Query 97285 AGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTT 97344 || || ||| ||||||| ||||| || |||||| ||||||||||||||| ||||| | Sbjct 8234749 AGTGCAGCAACTTGTGCACAGAAATCGTGGAGTACTCCTCTCCGGACGAGATTGCAGTCT 8234690 Query 97345 GCGTTCTGGCATCGGTCAATCTGCCCAAGTTTGT--------AGAGGGTAAAGTGTTT-- 97394 || ||||||| || || || ||| || ||| | | | ||| Sbjct 8234689 GCAACTTGGCATCCATCGCCCTCAACATGTTCGTCACTCCCGAGAAGACATACGATTTCA 8234630 Query 97395 --AATCTCAACCTATTGGCAAAGACGGTGCGTCTGGTGACTAGGAATCTAAACAAGATTA 97452 || || || | | | ||||| ||| || | |||||| |||||||| | Sbjct 8234629 AGAAACTTAAGGAAGTTACCAAGAC---------GGTTACCAAGAATCTTAACAAGATCA 8234579 Query 97453 TCGACAATGCAC-TCTATCCCATTCCCTCGGCTGCCAAGTCAAACTTTAAGCACCGACCC 97511 |||| || || |||| ||| | || ||| || || ||||| | ||| || ||| Sbjct 8234578 TCGA-TATAAACTTCTACCCCCTGCCAGAGGCAAAGAAATCCAACTTGAGGCATCGTCCC 8234520 Query 97512 ATCGGTATAGGAGTGCAAGGCTACGCAGACGCTCTGGCCATGATGGGTATAGCCTACG-A 97570 | || || || || || || | ||| ||||| || | ||| || | |||| | | Sbjct 8234519 GTGGGCATCGGTGTCCAGGGATTCGCTGACGCCCTAATTCTTATGCGTTTCCCCTATGAA 8234460 Query 97571 GGACTCGATGCAG-----TTGAATCGTGACATTTTCGAAACCATCTACCATGCAGCACTG 97625 | || || | ||||||| | || ||||||||||||||| | | || ||| Sbjct 8234459 AGTGAAGAAGCCGGTCTCTTGAATCAGCAGATATTCGAAACCATCTACTACGGCGCCCTG 8234400 Query 97626 ACGGAGAGTTGCCAACTGG-CCAGAGTGCACGGAGTCTACGAATCGTACCACGGTAGCCC 97684 | ||||| |||||| ||||| | |||| || ||| | || | || || || Sbjct 8234399 GAAGCCAGTTGTGAACTGGCCCAGA-TCGACGGCCCATATGAAACCTATGAGGGAAGTCC 8234341 Query 97685 GACCAGTCGTGGAGAGTTGCACTTCGAC---CGATACTCGGTGCACAGCCAAA--AGTGT 97739 || || |||| | |||| | || ||| | | |||| || Sbjct 8234340 CGTGAGCAAAGGCATTCTGCAGTACGACATGTGGGACAAAGTG--CCGACAAACCTTTGG 8234283 Query 97740 GACTGGTCATCGTTGCGCAAAGA---CATTGCTCGGTACGGTTTGAGAAACTCTTTGCTG 97796 |||||| || | | || || ||| | | ||||| | | ||||| || || Sbjct 8234282 GACTGG-CA--GAAACTGAAGGAGTCCATCAAGCAGCACGGTGTCCGGAACTCCCTGTTG 8234226 Query 97797 GTGGCACCGATGCCCACGGCTACCACTTCCCAAGTGTTTGGCAATGCTGAATCTTTTGAA 97856 || || || |||||||| || ||||| ||||| | | ||||| |||||||| || Sbjct 8234225 GTTGCGCCTATGCCCACTGCGTCCACTGCCCAAATTATGGGCAACAACGAATCTTTCGAG 8234166 Query 97857 CCGTTCACGTCAAACATGTACCAGAGACGCACCCAGTCTGGAGAGTTTCAATTGACCAAC 97916 |||| ||| | || || || || || | |||||| || || ||| || ||| Sbjct 8234165 CCGTACACAACGAATATTTATACCAGGCGAGTTCTGTCTGGCGAATTCCAAGTGGTTAAC 8234106 Query 97917 GTGCACTTGGTTCGAGACTTGGAACG--GCTCAATCTGTGGAACGATGACATGGCCCAGT 97974 || ||| | | ||| | |||| ||| | ||||| |||| |||||| | Sbjct 8234105 CATCATTTGTTAAGGGACCT--AACGGAGCTGGACTTGTGGGACGACGACATGAAGAACC 8234048 Query 97975 TGATCATGTACAACAATGGGTCCATTCAAAACATTACCATCATCCCGGAAGAGTTGCGCA 98034 ||||| | || || || || || || || ||| |||||| | || | ||| Sbjct 8234047 AAATCATTTCCAGCAGGGGCTCAATCCAGAATATTGAGGCCATCCCCCAGAAGGTCCGCG 8233988 Query 98035 GAATCTACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACA 98094 | ||||| || || ||||| || | ||| || || | ||||| || || Sbjct 8233987 ATCTGTACAAAACAGTGTGGGAAATCTCAGTGAAGTCGACCATTAAGATGGCCGCAGATC 8233928 Query 98095 GAGGTGTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACA 98154 |||| | | ||| || |||||||| |||||||| | | || || ||||| | ||| Sbjct 8233927 GAGGAGCGTTCATAGATCAGAGTCAGTCGTTCAACATTCATGTGGCAGAGCCAAACTATG 8233868 Query 98155 GTCGTATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACT 98214 | | || || |||||||| || | ||||| || ||||| || || ||||||| Sbjct 8233867 GAAAACTCACGTCCATACACTTCTATTCCTGGAAAGCTGGTCTCAAAACTGGAATGTACT 8233808 Query 98215 ATCTGAGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGA 98260 | ||| | |||||| | || | || ||||| | || || ||||| Sbjct 8233807 ACCTGCGCACAAAGCCAGCTGCAAACGCCATTCAGTTCACCGTGGA 8233762 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741008039125480