Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_004746.1 Length=36596 Score E Sequences producing significant alignments: (Bits) Value seq1936 187 6e-43 >seq1936 Length=1051 Score = 187 bits (206), Expect = 6e-43 Identities = 346/500 (69%), Gaps = 12/500 (2%) Strand=Plus/Plus Query 15520 TTTATTCCTTTTCAAGCTGCAGGGTCAATTGAAGCCAAAGAAAAGCAAGATGGTATTAAC 15579 |||||||| | || || || |||||||| || |||||||||||||| ||||||||| Sbjct 370 TTTATTCCCTGGCAGAAAGCCGGTTCAATTGAGGCTAAAGAAAAGCAAGACGGTATTAAC 429 Query 15580 TATAGAGAACTTGAAACCAAAGG-ATTCTGTACAATCACAAGTCATCAACAAGGATTAAT 15638 ||| | || ||| | ||||| ||| |||||||| | || |||| |||||| |||| Sbjct 430 TATCGGGA-CTTAGCTCAAAAGGGATTTTGTACAATTAGTAGCCATCCTCAAGGACTAAT 488 Query 15639 CAATGATGATGAATTCTATGAGTGGATTGTAAATTATATAGAAGAAAATTCACTTGACGT 15698 |||||| || || | ||| ||||| | | || | | | || || ||| || || Sbjct 489 CAATGACGAGCAAGTTTATCAGTGGTTACTTAACTTTGTTGAGCGGCATCGACTGGAAGT 548 Query 15699 TTTATTTTTTGGATATGATGCAATGGGAGTGACTAAAGTTATTCAA--ATGCTGCTTAAT 15756 | | || ||||| ||||| || |||| | |||| | | ||| | || ||| || Sbjct 549 TGTTTTCTTTGGTTATGACGCG-TGGGGG---CTAACGCC-TACAATCAAGCAGCTAGAT 603 Query 15757 ---AATACTGGATTTAATTTGCAACCTATTAGGCAACGGACAGGAGAACTGGCAAAGCCC 15813 ||| | || | |||||| | ||| |||| || || | ||| || | || Sbjct 604 TTAAATTCCGGTTGGCCATTGCAAGCCATTCGGCAGCGAACTAGTGAATTGAAGGATCCA 663 Query 15814 ACTAAATTCTTACAAAAGATATTTGTTGAAGGAACAATTAGCCGTCTGGATGACAAAATA 15873 ||||| || || || | ||| ||||||||||| | | ||| ||||||| ||| Sbjct 664 ACTAAGTTTTTGCAGACGATGTTTGTTGAAGGCTCGGTAGACCGCTTGGATGATCGAATT 723 Query 15874 ATGGAAAAAGCATTATTAAATGCTGTATTGCGTGAAGATTCAGTTGGTATTCAAGTAGAT 15933 |||||||| |||||| ||||||||| | | |||||| | ||||||||||||| ||| Sbjct 724 ATGGAAAAGGCATTACTAAATGCTGAAATTTATGAAGACAAAATTGGTATTCAAGTCGAT 783 Query 15934 AAGCGAAAAGCTACACTTAAAATTGACGTTGTTGATGCAATTATAGATGCTCTATATCAA 15993 || || || ||| | || ||||| || || ||||| | || ||||| ||| ||| Sbjct 784 AAAGCTAAGGCCACATTGAAGATTGATGTGGTAGATGCGTTAATTGATGCCTTATTTCAG 843 Query 15994 GGTATGAATCATTTTGAAGA 16013 | |||| |||| |||||||| Sbjct 844 GCTATGTATCACTTTGAAGA 863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 116977927426308