Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq5170 98.7 8e-16 >seq5170 Length=6624210 Score = 98.7 bits (108), Expect = 8e-16 Identities = 224/332 (67%), Gaps = 5/332 (2%) Strand=Plus/Minus Query 20948 CGATAATGCCGCAGCCCAGCCGGCCGCCCGAGTTGCCCGTAACCTTGCTAAGCGGGTGGT 21007 |||| | ||||||||| | ||| | || | ||| ||||| |||||| ||| |||| Sbjct 512634 CGATGACGCCGCAGCCAATGCGGGCACCTGCGTTTCCCGTGGACTTGCTCAGCTCGTGGC 512575 Query 21008 CTGTTAAGCCGAGGTCATCGCGATCCGTGTGCACTACCAAGCTACGACCCAATATGCTGA 21067 | |||||| |||||| ||| | ||| || || | | | || || | |||||| Sbjct 512574 CACCCTGGCCGAGATCATCGGCATCGGCGTGGACCACAACGGTGCGCCCGATGATGCTGT 512515 Query 21068 GCGGACCAAACAAGCTCATCACGTTGTCGCTCATGTCGACAGGCGTCAGCGCGGTGCAGC 21127 | || |||| | ||| |||| | |||| ||| || | | || || Sbjct 512514 CGGCGCCGAACAGCGTGATCTTCGAGTCGGTGATGTTGACCTTGGTGGGA-CAGTC--GC 512458 Query 21128 CCGCGGAGCGGACGTTGCCCAGATCGCCGACGTGCCGCTCTGCGGCGTCGGGAGCGCCGT 21187 | | || || ||||||||| || || | ||| || | || || ||||||| |||| Sbjct 512457 CGGTGGCCTCGATGTTGCCCAGGTCTCCCAGGTGACGGTTCTCGTCGGCGGGAGCTCCGT 512398 Query 21188 GATTTTGGTGCGTAGGG-TTAAAGTGCTCGCCGGCGGACGTGCAGCCGTTGCTGGTGTCG 21246 | | | | ||||||| || |||||| |||| ||| ||||||||||| || |||| Sbjct 512397 GCTCCTTGC-CGTAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTTGTCC 512339 Query 21247 CCGAACTCGTGAACGTGAAAGCCGTGCAGTCC 21278 ||||||||||| ||||| || |||||||| || Sbjct 512338 CCGAACTCGTGTACGTGGAATCCGTGCAGGCC 512307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414544894457062