Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_005262.3 Length=63882 Score E Sequences producing significant alignments: (Bits) Value seq1953 235 2e-57 >seq1953 Length=1017 Score = 235 bits (260), Expect = 2e-57 Identities = 428/613 (70%), Gaps = 15/613 (2%) Strand=Plus/Plus Query 13580 GCTTGGCATCCGCTCGGC-TGGAAGCCGGCGTGGTTCGCTGAGATCGAGAAATTCCCTAG 13638 |||||||| ||||||||| | ||||||| |||||||||| ||||||||| ||||| || Sbjct 11 GCTTGGCAACCGCTCGGCCTCGAAGCCG-CGTGGTTCGCCGAGATCGAGCCGTTCCCGAG 69 Query 13639 CGCCGTGCTGGCGCATCATTACCCCGATGTTCCTAACCTTGGAGACATGACGAAGATCAC 13698 ||||||||| || || | ||||||| || || ||||| || |||||||| | |||| | Sbjct 70 CGCCGTGCTCGCCCACCGTTACCCCCGCGTGCCCAACCTGGGCGACATGACCACGATCGC 129 Query 13699 GCGCGCGGTGCTGGCGCGTGAGGTCGAAGTGCCTGACGTGCTGGTCGGTGGCACGCCGTG 13758 ||| ||| | || | || | ||| ||| | |||||||| ||||||||||| Sbjct 130 CCGCCAGGTCCGCGCCGGCACCGTGCCCGCGCCAGACCTCCTGGTCGGCGGCACGCCGTG 189 Query 13759 CCAGGCATTCAGCCTCGCGGGT---CTGCGTGAATCCCTCTCGGATGAGCGCGGGAATCT 13815 |||| | |||||| | || || | |||| ||| | || |||||| || Sbjct 190 CCAGTCGTTCAGCGTGGCCGGCGCCCGCCGTGG---CCTGGCTGACCCGCGCGGCGCCCT 246 Query 13816 TACTTTGAAATTCGTTGAGTTGATCGATGCAATTGACCATGTTCGGCGACTCGATGGCGC 13875 || | | || ||| | |||| || ||||| || || | || || Sbjct 247 GACCCTTGCCTATGTGGAGCTTGCAAATGCCATCGACCAAACCCGCCGCCAAGACCGCCG 306 Query 13876 AGCACCGGCCGTCGTCGTCTGGGAAAACGTCCCCGGCGTCCTCT-CGACAAAAGACAATG 13934 | ||||| ||||||||||||||||||||||||||||| |||| || ||| | Sbjct 307 CCCGCCGGCAACGCTCGTCTGGGAAAACGTCCCCGGCGTCCTCAGCGACCGCAG-CAACG 365 Query 13935 CGTTCGGGTGCTTTCTGGCTGGGCTTGCCGGAGAA-GATGAGCCGCTGGTCGCACCAGGG 13993 | ||||| ||| |||| | || ||||| ||| | | || ||| | | |||||| Sbjct 366 CCTTCGGACACTTCCTGGGAGCACTGGCCGGCGAAAGCCGTGC-GCTCGAACCGCCAGGG 424 Query 13994 GGCCGGTGGGCGAACGCTGGTTGTGTGTATGGACCCCAGCGT-GCAGTCGCTTGGCGGAC 14052 |||||| |||| |||||||||| |||||||| ||| ||| |||| ||||| Sbjct 425 CAAAAATGGGCGCACGCAGGTTGTGTGTCTGGACCCCGGCGCCGCA-TCGCCTGGCGCTT 483 Query 14053 CCTGGACGCCCAATATTTCGGAGTGGCCCAACGCCGCCGCCGTGTGTTCGTTGTCGCAAG 14112 || || || ||||||||||| || |||||||| ||||| || ||||| |||| ||||| Sbjct 484 GCTCGATGCTCAATATTTCGGCGTCGCCCAACGGCGCCGTCGCGTGTTTCTTGTGGCAAG 543 Query 14113 TGGTCGAGACTGGTTCGATCCCACACCGGTACTTTTTGAGTGGGATGGCGTGCGCCGGGA 14172 |||| ||| | |||||||| | ||||| ||||||| | ||| ||||| |||| Sbjct 544 TGGTGGAGGTGGCGTCGATCCCGCCGAGGTAC-TTTTGAGCGCCCAGGCCTGCGCGGGGA 602 Query 14173 TTGTCCGCCGCGC 14185 || | ||||| || Sbjct 603 TTCTTCGCCGGGC 615 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 204283848409329