Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq5396 167 5e-36 seq5402 120 7e-22 >seq5396 Length=9561034 Score = 167 bits (184), Expect = 5e-36 Identities = 163/210 (78%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || || || |||||||| ||||||||||| || || | || ||||| || || Sbjct 8331053 TGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGC 8330994 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || ||||| || || || | ||| ||||| ||||| ||||||||||| ||||||||||| Sbjct 8330993 TTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTGTCCTGAATCTTG 8330934 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 ||||| |||||||| | ||||| |||||| ||||| || || || ||||| || || Sbjct 8330933 GCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGATGGTCTTGCCCGTG 8330874 Query 104537 AGTGTTTTTACAAATATCTGCATTTTGTGT 104566 || || || || || |||||||| |||||| Sbjct 8330873 AGGGTCTTAACGAAGATCTGCATCTTGTGT 8330844 >seq5402 Length=10656099 Score = 120 bits (132), Expect = 7e-22 Identities = 147/201 (73%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| || || || | ||||| || ||||| || || Sbjct 571669 GTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCCTCCAGTTGCTTGCCG 571728 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| ||||| || || || || || || ||||| ||||| || || Sbjct 571729 GCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTC 571788 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || ||| || || ||||| | ||||| ||||||||||| | || Sbjct 571789 ACATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGTCTTACCAGTCAAGGTC 571848 Query 104543 TTTACAAATATCTGCATTTTG 104563 || ||||| |||||||||||| Sbjct 571849 TTCACAAAGATCTGCATTTTG 571869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151316923091284