Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_005336.1 Length=139962 Score E Sequences producing significant alignments: (Bits) Value seq5396 102 7e-17 >seq5396 Length=9561034 Score = 102 bits (112), Expect = 7e-17 Identities = 176/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Plus Query 5240 CCGGTAGAACCGAATCCAGAGTCGCCGCGGTCGGTGTCGTCCAAGCGGTTAACCTCTTGA 5299 || || || |||||||| ||||| || |||||||| |||| || ||| || Sbjct 2096105 CCCGTGGACCCGAATCCTCCCTCGCCACGTTCGGTGTCCTCCAGTTTGTCCACCAACTGC 2096164 Query 5300 ACTGCTGGGTGCGATATGCGTTCGCATATTAGCTGAGCTATCCTGTCTCCCTTCTTAACC 5359 | | | || | | ||||||||||| || | ||| || || | ||| || ||| ||| Sbjct 2096165 AGTTCCGGATAGAAGATGCGTTCGCAAATGAACTGGGCGATGCGGTCGCCGCGCTTCACC 2096224 Query 5360 TCAAAGTCGCTGTTTCCGA--AGTTAAACAGCACCACCCCGACATTGCCTCGGTAGTCTT 5417 ||||| | || ||||| ||| ||||| || || |||| ||||| || ||||| | Sbjct 2096225 TCAAA--CTCTACGTCCGAGTGGTTGAACAGGACGACTCCGAGGTTGCCGCGATAGTCCT 2096282 Query 5418 CGTCGATAACGCCAGCGCCCACGTCGATAAAGTGTTTGACCGCAAGGCCGGAACGTGGTG 5477 |||| | ||||| || ||||| ||||| |||| || || || || || || || || | Sbjct 2096283 CGTCCACCACGCCGGCACCCACATCGATGAAGTTCTTCACGGCCAGCCCTGATCGCGGAG 2096342 Query 5478 CTATGCGTCCGTAG 5491 | | ||||||||| Sbjct 2096343 CCACTCGTCCGTAG 2096356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 447719488431760