Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq5396 163 2e-35 >seq5396 Length=9561034 Score = 163 bits (180), Expect = 2e-35 Identities = 213/290 (73%), Gaps = 6/290 (2%) Strand=Plus/Plus Query 5501 ACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCT 5560 |||||||||||||||||||| || |||| | ||| || || ||||| ||||| Sbjct 2096102 ACGCCCGTGGACCCGAATCCTCCCTCGCCACGTTCGGTGTCCTCCAGTTTGTCCACCAAC 2096161 Query 5561 TCCACATCGGGGAACGCAG-CGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTT 5619 | || || ||| | || ||| ||||| || | ||| || || |||||||| ||| Sbjct 2096162 TGCAGTTC-CGGATAGAAGATGCGTTCGCAAATGAACTGGGCGATGCGGTCGCCGCGCTT 2096220 Query 5620 TACCTCGAAATCGTTGTGGCCGA--AGTTGAACAGCACCACGCCCACGTTGCCGCGGTAG 5677 ||||| || || | | |||| ||||||||| || || || | ||||||||| ||| Sbjct 2096221 CACCTCAAACTC--TACGTCCGAGTGGTTGAACAGGACGACTCCGAGGTTGCCGCGATAG 2096278 Query 5678 TCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGG 5737 || |||| | |||||| || ||||| |||||||||| ||| || ||||| || || || Sbjct 2096279 TCCTCGTCCACCACGCCGGCACCCACATCGATGAAGTTCTTCACGGCCAGCCCTGATCGC 2096338 Query 5738 GGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 |||||||| || |||||| | || ||||||| ||| | |||||||| || Sbjct 2096339 GGAGCCACTCGTCCGTAGGAGCCCTCGGGAACCTGCACTTGCAGGTCGGT 2096388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430025452366376