Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_005839.2
Length=131680
Score E
Sequences producing significant alignments: (Bits) Value
seq5238 96.9 3e-15
seq5402 87.8 2e-12
seq5395 86.0 5e-12
>seq5238
Length=3592495
Score = 96.9 bits (106), Expect = 3e-15
Identities = 139/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Minus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594
|||||| || |||||||| || | || || |||||||||||||||| ||| || |
Sbjct 2679425 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAA 2679366
Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654
|| | |||||||||||| || | | ||||||||| || || ||| | |
Sbjct 2679365 GATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 2679306
Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714
| | ||||| || | || |||| ||| | || ||||| || |||||||| ||||||||
Sbjct 2679305 CTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCAC 2679246
Query 48715 AAAAATCTGCATCGTG 48730
|| || ||||| |||
Sbjct 2679245 GAAGATTTGCATGGTG 2679230
>seq5402
Length=10656099
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 48499 ACCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGC 48558
||| ||||||| | | || || ||||| || |||||| || |||||||| || |
Sbjct 571638 ACCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 571697
Query 48559 CAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGG 48618
|| || |||||||||| ||||| ||| || | || | |||||||||||| ||
Sbjct 571698 CAGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 571757
Query 48619 CACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGT 48678
| | ||||||||| || || ||| | | | | || || |||| | ||||
Sbjct 571758 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCAC 571817
Query 48679 CTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
||| | || ||||| ||||| || | || |||||||| ||||||||
Sbjct 571818 CTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 571865
Score = 84.2 bits (92), Expect = 2e-11
Identities = 136/193 (70%), Gaps = 2/193 (1%)
Strand=Plus/Plus
Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593
|||||| || ||||||||||||| | | || || ||||||| |||||||| ||| ||
Sbjct 571446 CTCCTTCTGGATGTTGTAATCAGAAAGAGTG-CGTCCGTCCTCGAGCTGCTTGCCGGCGA 571504
Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAG 48653
| || | |||||||||||| || | | ||||||||| || || ||| |
Sbjct 571505 AGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGT 571564
Query 48654 ACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCA 48713
| | ||||| || | | |||| ||| | || ||||| || ||||| | ||| || |
Sbjct 571565 TCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGA 571624
Query 48714 CAAAAATCTGCAT 48726
|||| ||||||||
Sbjct 571625 CAAAGATCTGCAT 571637
>seq5395
Length=2659632
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || ||| |||||| || ||||||||||| | || || |||||||
Sbjct 975776 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTC 975835
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || | || | ||||||||| || || | | |||||||||
Sbjct 975836 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 975895
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | | ||||| |||| | ||| ||| | || ||||| ||
Sbjct 975896 GATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 975955
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || ||||| ||||| |||||
Sbjct 975956 GCCAGTCAGGGTCTTCACGAAAATTTGCAT 975985
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576
||| || || || ||| |||||| || |||||||| || | || || |||||||
Sbjct 975548 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTC 975607
Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636
||||||||| ||| || | || | ||||||||| || || | | |||||||||
Sbjct 975608 CAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTG 975667
Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696
|| || ||| | | | |||||||||| | ||| ||| | || ||||| ||
Sbjct 975668 GATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTT 975727
Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCAT 48726
|| || || || ||||| || ||||||||
Sbjct 975728 GCCAGTCAGGGTCTTCACGAAGATCTGCAT 975757
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 421222844923523
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |