Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_005906.1
Length=81755
Score E
Sequences producing significant alignments: (Bits) Value
seq5376 123 1e-23
seq5120 123 1e-23
seq5266 118 6e-22
>seq5376
Length=10037194
Score = 123 bits (136), Expect = 1e-23
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499
||||||||| | | ||||||||||| |||||||||| ||||||||||||||||||||
Sbjct 8915141 AATAAAAAAGTTATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 8915200
Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531
||||||||| ||||||||||||||||||||||
Sbjct 8915201 CGACGCTCTAACCAACTGAGCTAATGGGCCGT 8915232
>seq5120
Length=3129309
Score = 123 bits (136), Expect = 1e-23
Identities = 90/104 (87%), Gaps = 2/104 (2%)
Strand=Plus/Minus
Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488
|||| | |||||| ||||||| | |||||||||| |||||||||| |||||||||
Sbjct 3120950 AAATGGAAAATTAA--AAAAATCGATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 3120893
Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532
|||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 3120892 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTTC 3120849
Score = 116 bits (128), Expect = 2e-21
Identities = 71/76 (93%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513
|||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 3121387 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 3121328
Query 11514 ACTGAGCTAATGGGCC 11529
||||||||||||||||
Sbjct 3121327 ACTGAGCTAATGGGCC 3121312
Score = 86.0 bits (94), Expect = 3e-12
Identities = 63/72 (88%), Gaps = 4/72 (6%)
Strand=Plus/Minus
Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACG- 11536
||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||
Sbjct 3121172 CGACCTTCGCGTTATTAGCACGACGCTCTAGCCAACTGAGCTAATGGGCCTAATTGACGC 3121113
Query 11537 -ATTGTGATTTT 11547
||| |||||||
Sbjct 3121112 CATTTTGATTTT 3121101
>seq5266
Length=3715358
Score = 118 bits (130), Expect = 6e-22
Identities = 80/89 (90%), Gaps = 1/89 (1%)
Strand=Plus/Minus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
||||||||| || | |||||||||| |||||||||| |||||||||||||||||||||
Sbjct 858360 AATAAAAAA-CAGACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 858302
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||| |||| |||||||||||||||
Sbjct 858301 GACGCTCTAACCAGCTGAGCTAATGGGCC 858273
Score = 116 bits (128), Expect = 2e-21
Identities = 80/90 (89%), Gaps = 1/90 (1%)
Strand=Plus/Plus
Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500
|| |||||| || ||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 850123 AAAAAAAAAGCAT-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 850181
Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530
|||||||| |||| ||||||||||||||||
Sbjct 850182 GACGCTCTAACCAGCTGAGCTAATGGGCCG 850211
Score = 113 bits (124), Expect = 2e-20
Identities = 87/103 (84%), Gaps = 2/103 (2%)
Strand=Plus/Plus
Query 11429 AAATATAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486
|| || | ||| || |||||| || | |||||||||| |||||||||| |||||||
Sbjct 127307 AATTAAAAAATAAAAGAAAAATAAACTGCTGGCCCATGAGGGGATCGAACCCGCGACCTT 127366
Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529
|||||||||||||||||||||| |||| |||||||||||||||
Sbjct 127367 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 127409
Score = 111 bits (122), Expect = 8e-20
Identities = 69/75 (92%), Gaps = 0/75 (0%)
Strand=Plus/Plus
Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514
||||||||||| |||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 857276 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 857335
Query 11515 CTGAGCTAATGGGCC 11529
|||||||||||||||
Sbjct 857336 CTGAGCTAATGGGCC 857350
Lambda K H
0.638 0.409 0.919
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 261473598618748
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |