Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq5376 123 1e-23 seq5120 123 1e-23 seq5266 118 6e-22 >seq5376 Length=10037194 Score = 123 bits (136), Expect = 1e-23 Identities = 83/92 (90%), Gaps = 1/92 (1%) Strand=Plus/Plus Query 11441 AATAAAAAA-TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCA 11499 ||||||||| | | ||||||||||| |||||||||| |||||||||||||||||||| Sbjct 8915141 AATAAAAAAGTTATTTTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCA 8915200 Query 11500 CGACGCTCTRACCAACTGAGCTAATGGGCCGT 11531 ||||||||| |||||||||||||||||||||| Sbjct 8915201 CGACGCTCTAACCAACTGAGCTAATGGGCCGT 8915232 >seq5120 Length=3129309 Score = 123 bits (136), Expect = 1e-23 Identities = 90/104 (87%), Gaps = 2/104 (2%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||| | |||||| ||||||| | |||||||||| |||||||||| ||||||||| Sbjct 3120950 AAATGGAAAATTAA--AAAAATCGATCTGGCCCATGAGGGGATCGAACCCGCGACCTTCG 3120893 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCGTC 11532 |||||||||||||||||||| |||||||||||||||||||| || Sbjct 3120892 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATGGGCCTTC 3120849 Score = 116 bits (128), Expect = 2e-21 Identities = 71/76 (93%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 11454 ATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCA 11513 |||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 3121387 ATTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCA 3121328 Query 11514 ACTGAGCTAATGGGCC 11529 |||||||||||||||| Sbjct 3121327 ACTGAGCTAATGGGCC 3121312 Score = 86.0 bits (94), Expect = 3e-12 Identities = 63/72 (88%), Gaps = 4/72 (6%) Strand=Plus/Minus Query 11480 CGACCTTCGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC--GTCGACG- 11536 ||||||||||||||||||||||||||||| ||||||||||||||||||| | |||| Sbjct 3121172 CGACCTTCGCGTTATTAGCACGACGCTCTAGCCAACTGAGCTAATGGGCCTAATTGACGC 3121113 Query 11537 -ATTGTGATTTT 11547 ||| ||||||| Sbjct 3121112 CATTTTGATTTT 3121101 >seq5266 Length=3715358 Score = 118 bits (130), Expect = 6e-22 Identities = 80/89 (90%), Gaps = 1/89 (1%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||||||||| || | |||||||||| |||||||||| ||||||||||||||||||||| Sbjct 858360 AATAAAAAA-CAGACTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 858302 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| ||||||||||||||| Sbjct 858301 GACGCTCTAACCAGCTGAGCTAATGGGCC 858273 Score = 116 bits (128), Expect = 2e-21 Identities = 80/90 (89%), Gaps = 1/90 (1%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || |||||| || ||||||||||| |||||||||| ||||||||||||||||||||| Sbjct 850123 AAAAAAAAAGCAT-TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCAC 850181 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||| |||| |||||||||||||||| Sbjct 850182 GACGCTCTAACCAGCTGAGCTAATGGGCCG 850211 Score = 113 bits (124), Expect = 2e-20 Identities = 87/103 (84%), Gaps = 2/103 (2%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAAT--TGGCCCATGAAAGGATCGAACCTTCGACCTT 11486 || || | ||| || |||||| || | |||||||||| |||||||||| ||||||| Sbjct 127307 AATTAAAAAATAAAAGAAAAATAAACTGCTGGCCCATGAGGGGATCGAACCCGCGACCTT 127366 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| |||| ||||||||||||||| Sbjct 127367 CGCGTTATTAGCACGACGCTCTAACCAGCTGAGCTAATGGGCC 127409 Score = 111 bits (122), Expect = 8e-20 Identities = 69/75 (92%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||||||||| |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 857276 TTGGCCCATGAGGGGATCGAACCCGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 857335 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 857336 CTGAGCTAATGGGCC 857350 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261473598618748