Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq4614 159 5e-35 seq4505 147 3e-31 seq3215 147 3e-31 seq450 147 3e-31 seq5497 122 1e-23 seq5054 93.3 7e-15 seq5522 91.5 2e-14 >seq4614 Length=52314 Score = 159 bits (176), Expect = 5e-35 Identities = 178/238 (75%), Gaps = 0/238 (0%) Strand=Plus/Minus Query 16437 AGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTC 16496 ||||||| |||| | || || ||||||||||| || ||||| |||||||||||||| | Sbjct 3837 AGCGTCACCGCAAAATGCTGCGTGATAACATCCAGGGTATCACGAAGCCAGCTATCCGCC 3778 Query 16497 GTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTG 16556 || ||||||||||||| || || || || |||| ||| | | || || || | || | Sbjct 3777 GTTTGGCTCGTCGTGGCGGTGTAAAACGCATCTCCGGACTTATATACGAGGAAACACGAG 3718 Query 16557 ATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACG 16616 ||| ||||| | ||| | ||| |||||||| |||||| || ||| ||||| |||| Sbjct 3717 GCGTTCTGAAGGTGTTCTTGGAGAACGTTATCCGTGATGCCGTCACCTACACCGAACACG 3658 Query 16617 CTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 | || | ||||| |||||| ||||||| | || || ||| |||| | |||||||| Sbjct 3657 CCAAGAGGAAGACCGTCACCGCCATGGACGTTGTGTACGCACTGAAGAGGCAAGGCCG 3600 >seq4505 Length=1357388 Score = 147 bits (162), Expect = 3e-31 Identities = 194/268 (72%), Gaps = 1/268 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | || || | ||||||||| || ||||| ||||||||||| Sbjct 1356924 CGCCAAGCGTCACCGCAAAGTGCTGCGTG-TAACATCCAGGGTATCACGAAGCCAGCTAT 1356982 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||||| || || ||||| |||| ||| | | || | || | Sbjct 1356983 CCGCCGTTGGGCTCGTCGTGGCGGTGTTAAGCGCATCTCCGGACTCATATAGAAGGAAAC 1357042 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||| | ||| |||||||| |||||| | ||| ||||| Sbjct 1357043 ACGAGGCGTTCTGAAGGTGTTCTTGGAGAACGTTATCCGTGATGCCGTTACCTACACCGA 1357102 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| | || | ||||| |||||| ||||||| | || || ||| |||| | ||||| Sbjct 1357103 ACACACCAAGAGGAAGACCGTCACCGCCATGGACGTTGTGTACGCACTGAAGAGGCAAGG 1357162 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 1357163 CCGCACCCTGTACGGTTTCGGCGGTTAA 1357190 >seq3215 Length=23150 Score = 147 bits (162), Expect = 3e-31 Identities = 194/268 (72%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | || || | ||||||||| || ||||| ||||||||||| Sbjct 18244 CGCCAAGCGTCACCGCAAAGTGCTGCGTG-TAACATCCAGGGTATCACGAAGCCAGCTAT 18186 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||||| || || ||||| |||| ||| | | || | || | Sbjct 18185 CCGCCGTTGGGCTCGTCGTGGCGGTGTTAAGCGCATCTCCGGACTCATATAGAAGGAAAC 18126 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||| | ||| |||||||| |||||| | ||| ||||| Sbjct 18125 ACGAGGCGTTCTGAAGGTGTTCTTGGAGAACGTTATCCGTGATGCCGTTACCTACACCGA 18066 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| | || | ||||| |||||| ||||||| | || || ||| |||| | ||||| Sbjct 18065 ACACACCAAGAGGAAGACCGTCACCGCCATGGACGTTGTGTACGCACTGAAGAGGCAAGG 18006 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 18005 CCGCACCCTGTACGGTTTCGGCGGTTAA 17978 >seq450 Length=6568 Score = 147 bits (162), Expect = 3e-31 Identities = 194/268 (72%), Gaps = 1/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | || || | ||||||||| || ||||| ||||||||||| Sbjct 1661 CGCCAAGCGTCACCGCAAAGTGCTGCGTG-TAACATCCAGGGTATCACGAAGCCAGCTAT 1603 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||| |||||||||||| || || ||||| |||| ||| | | || | || | Sbjct 1602 CCGCCGTTGGGCTCGTCGTGGCGGTGTTAAGCGCATCTCCGGACTCATATAGAAGGAAAC 1543 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 || | ||| ||||| | ||| | ||| |||||||| |||||| | ||| ||||| Sbjct 1542 ACGAGGCGTTCTGAAGGTGTTCTTGGAGAACGTTATCCGTGATGCCGTTACCTACACCGA 1483 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| | || | ||||| |||||| ||||||| | || || ||| |||| | ||||| Sbjct 1482 ACACACCAAGAGGAAGACCGTCACCGCCATGGACGTTGTGTACGCACTGAAGAGGCAAGG 1423 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||| | | || ||||| || ||||| Sbjct 1422 CCGCACCCTGTACGGTTTCGGCGGTTAA 1395 >seq5497 Length=21151 Score = 122 bits (134), Expect = 1e-23 Identities = 147/200 (74%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 16475 ATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 ||||| |||||||||||||| ||| ||||| ||||||| || || || || |||| ||| Sbjct 604 ATCACGAAGCCAGCTATCCGCCGTTTGGCTAGTCGTGGCGGTGTAAAACGCATCTCCGGA 663 Query 16535 TTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGAT 16594 | | || || || | || | ||| |||| | ||| | ||| |||||||| |||| Sbjct 664 CTTATATACGAGGAAACACGAGGCGTTCCGAAGGTGTTCTTGGAGAACGTTATCCGTGAT 723 Query 16595 GCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTAT 16654 || || ||| ||||| ||||| || | ||||| |||||| ||||||| | || || Sbjct 724 GCCGTCACCTACACCGAACACGCCAAGAGGAAGACCGTCACCGCCATGGACGTTGTGTAC 783 Query 16655 GCATTGAAACGTCAAGGCCG 16674 ||| |||| | |||||||| Sbjct 784 GCACTGAAGAGGCAAGGCCG 803 >seq5054 Length=5967589 Score = 93.3 bits (102), Expect = 7e-15 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| || || ||||||||||| || ||||||||||| || || Sbjct 5811841 CGCCAAGCGCCATCGCAAGGTGCTCCGTGATAACATCCAGGGTATCACCAAGCCCGCCAT 5811900 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 || |||||||| ||||| || || || |||||| ||||||| || | || || || | Sbjct 5811901 TCGCCGTCTGGCCCGTCGCGGCGGTGTGAAGCGTATCTCTGGCCTGATTTACGAGGAAAC 5811960 Query 16552 TCGTGATGT 16560 ||| | ||| Sbjct 5811961 TCGCGGTGT 5811969 >seq5522 Length=1057 Score = 91.5 bits (100), Expect = 2e-14 Identities = 82/103 (80%), Gaps = 0/103 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| |||||||| |||| | || || || |||||||| || ||||| ||||||||||| Sbjct 559 CGCCAAGCGTCACCGCAAAGTGCTGCGTGACAACATCCAGGGTATCACGAAGCCAGCTAT 500 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGA 16534 ||| ||| ||||||||||||| || || || || |||| ||| Sbjct 499 CCGCCGTTTGGCTCGTCGTGGCGGTGTAAAACGCATCTCCGGA 457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79070150282439