Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5396 196 1e-44 >seq5396 Length=9561034 Score = 196 bits (216), Expect = 1e-44 Identities = 562/862 (65%), Gaps = 2/862 (0%) Strand=Plus/Minus Query 363447 TGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGGATGTTGA 363506 ||| || ||||| |||||||| ||||| || || || || |||||| | |||| | || Sbjct 8235528 TGAGCGTCCGCAACATATGTTGATGCGCGTGGCGATCGGAATCCATGGAGAGGATATAGA 8235469 Query 363507 TGCCGCGATTGAAACATATAAGCTTCTAAGTGCTCGTGTATTCACGCACGCCACGCCAAC 363566 ||| || | ||||| ||||| || | | || ||||| || || ||||||| Sbjct 8235468 TGCAGCCGTGGAAACTTATAACCTCTTGTCGGAGCGATACTTCACTCATGCGTCGCCAAC 8235409 Query 363567 AATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCTTCTAAAAATGAA 363626 | | |||| || | || ||| |||| ||||| || || | | |||| Sbjct 8235408 GCTTTTTGCCGCTGCCACAAATCGCCCGCAGCTGTCGTCTTGTTTCCTCTTGACCATGAC 8235349 Query 363627 GGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCTTATTTCCAAGAA 363686 | ||| ||||||||||| || ||| | | | || | || || | || || ||| Sbjct 8235348 AGCCGACTCCATCGAGGGCATTTTTAAGTCCGTGGAGCAGTGCGCCATGATCTCGAAGTC 8235289 Query 363687 TGCAGGCGGAATTGGTGT-ATCGATCCACAATGTTCGTGCACAGAACAGTTACATTCGCG 363745 || ||||| ||||| | | || |||| | || ||| || || | ||| ||| Sbjct 8235288 GGCCGGCGGCATTGGACTTAACG-TCCATTGCATCCGAGCAAAGGGCACCTCGATTTGCG 8235230 Query 363746 GCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGTGTGTTTGACAATACTGCGA 363805 |||| || || ||||| |||||||||||| | | || || ||||| ||| Sbjct 8235229 GCACGAACGGCACTTCCAATGGCCTGGTTCCCATGTTGAGGGTCTTCAACAATGTGGCGC 8235170 Query 363806 GGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATGTATCTCGAGCCTC 363865 | || ||||| ||||| || || ||||| || || ||||| || || || ||||| Sbjct 8235169 GCTATGTCGATCAGGGAGGCGGCAAGCGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCT 8235110 Query 363866 ATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGAAAAGAGGAATTGC 363925 || | || | |||||||| || || || ||| ||||| || || ||||| | Sbjct 8235109 GGCACTCGGACGTCTTTGAGTTCCTGGAACTTAAGAAGAACACCGGCAAGGAGGAGAATC 8235050 Query 363926 GTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATGAAGCGCGTGGAGG 363985 | || || ||||||||||| || || ||| | | || | |||||||||||||| |||| Sbjct 8235049 GCGCCCGCGATCTGTTCTACGCCCTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGG 8234990 Query 363986 CAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTTTCCGATGTATGGG 364045 | | |||||||||| | || || || |||| || || ||| |||||| |||| Sbjct 8234989 CCAATGGAGATTGGTCACTAATGTGTCCGCATAAATGCCCTGGCCTTCACGATGTGTGGG 8234930 Query 364046 GTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAGGCTCGTAAGACAA 364105 | || || | | | || || |||||||| ||||| || || Sbjct 8234929 GCGATGAATTCGAAAAGTTGTATGAGAAGTATGAGCAAGAGGGTCGTGCCAACCGAACGG 8234870 Query 364106 TTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAGACAGGAACACCCT 364165 || || || | ||||| ||||| || || | ||| | || || |||| |||| Sbjct 8234869 TTAAGGCTCAATCCTTGTGGTTCGCCATTATTGAGGCACAGGTCGAAACTGGAAACCCCT 8234810 Query 364166 ATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCACCTTGGTACAATTC 364225 | ||| ||| || ||| | |||||| | ||| |||||||||| | | || || || Sbjct 8234809 ACATGCTGTTTAAGGATGCCTGCAACAGGAAGAGCAACCAGCAGAATGTCGGCACCATCA 8234750 Query 364226 AGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGACGAGACTGCCGTAT 364285 || |||||| | || || || || | || ||| || |||| ||||||| ||| || | Sbjct 8234749 AGTGCAGCAACTTGTGCACAGAAATCGTGGAGTACTCCTCTCCGGACGAGATTGCAGTCT 8234690 Query 364286 GTAACCTTGCGTCGATCGCGCT 364307 | ||| | || || ||||| || Sbjct 8234689 GCAACTTGGCATCCATCGCCCT 8234668 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303261370218986