Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq5396 192 6e-44 seq5395 156 4e-33 seq5402 134 1e-26 seq5238 132 5e-26 seq5170 102 8e-17 >seq5396 Length=9561034 Score = 192 bits (212), Expect = 6e-44 Identities = 934/1459 (64%), Gaps = 34/1459 (2%) Strand=Plus/Plus Query 144737 GCCGCTGGCTTGGTGCGCAAATAGTACATGCCCGTTTTGAGTCCCGAGCGCCAAGTGTAG 144796 || |||||||| ||||||| |||||||| || |||||||| || | ||| | ||| Sbjct 8233786 GCAGCTGGCTTTGTGCGCAGGTAGTACATTCCAGTTTTGAGACCAGCTTTCCAGGAATAG 8233845 Query 144797 TCGTGTATCGACGTCATCAGAGCGTACGTGGGCTCCGCCACAAACAAATTTAGCGATTGG 144856 |||||| ||||| | | || | ||||| |||||| | || | ||| || Sbjct 8233846 AAGTGTATGGACGTGAGTTTTCCATAGTTTGGCTCTGCCACATGAATGTTGAACGACTGA 8233905 Query 144857 CTTTGATCAATGAAAGCGTTGCGGTCGGCGGCCATCTCAATCATACGTTTGCATTTC-AT 144915 || ||||| ||||| || || || |||||||||| ||| | || | || | || Sbjct 8233906 CTCTGATCTATGAACGCTCCTCGATCTGCGGCCATCTTAATGGT-CGACTTCACTGAGAT 8233964 Query 144916 TTCCCAAGCGGTCTTGTACAAA---CGTTTAATGTGGTCCGGAATGCCGTCAATCGCCTG 144972 |||||| | || ||||||| | || | ||| || ||| | ||||| ||| Sbjct 8233965 TTCCCACACTGTTTTGTACAGATCGCGGACCTTCTGG---GGGATGGCCTCAATATTCTG 8234021 Query 144973 AATCGACCCCTTGTGCGCAAATATGGCGTTCCGCATTTCGGACGTGT-ACAGTTTTAACT 145031 || || ||| || | || || |||| ||| ||| ||| ||| | | || Sbjct 8234022 GATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCATGTCGT-CGTCCCACAAGTCCAGCT 8234080 Query 145032 TGATCAAGTCGTCAATTAAGTACTGATTGACGACCTGAAACTCGCCGGCCAACACACGAC 145091 | | ||| | || | || || || || || || ||||| | || || || | Sbjct 8234081 CCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTGGAATTCGCCAGACAGAACTCGCC 8234140 Query 145092 GCAAATACACGTTAGACGTGAAGGGTTCAAAAGACTCGTTATTGCCCAGGATTTGAGCGG 145151 ||| | || | ||| | || || ||||| ||||| ||||||| ||||| || | Sbjct 8234141 TGGTATAAATATTCGTTGTGTACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAG 8234200 Query 145152 TCGTTGCGGTGGGCATGTACGCCACCAATAATGAATTGCGCAGGCCGTGCTTCTTGATGT 145211 | | || |||||||| ||| ||||| | || || || | ||||||| ||||||| Sbjct 8234201 TGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGATGG 8234260 Query 145212 CTTCCTTTAGCGTACCCCAATCCCATAGCGAAGTCGGCCTCACGTCCCACATGTCGTACT 145271 ||||| || | ||| ||||| || |||||| ||||||||||||||||| Sbjct 8234261 ACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTTGTCGGCACTTTGTCCCACATGTCGTACT 8234320 Query 145272 GCAAAATGCCCTCGCTGGCGGGGCTGCCTTGAAAGGAACTGTAACTGCCCCAAGTTTTGG 145331 ||| |||||| | ||| |||| || || | | ||| || ||| | | || Sbjct 8234321 GCAGAATGCCTTTGCTCACGGGACTTCCCTCATAGGTTTCATATGGGCCGTCGATCTGGG 8234380 Query 145332 CGAGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGA 145391 | || || ||||| || ||||| |||||| | || || || ||| || ||| || | Sbjct 8234381 CCAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCGAATATCTGCTGATTCA 8234440 Query 145392 GCAGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCC 145451 || ||||| || || || || || | |||| || | | || || |||| | Sbjct 8234441 AGAGACCGGCTTCTTCACTTTCATAGGGGAAACGCATAAGAATTAGGGCGTCAGCGAATC 8234500 Query 145452 CCTGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCG-ATA 145510 |||| | || | ||| | ||| ||||| ||| |||| || | ||| || | | Sbjct 8234501 CCTGGACACCGATGCCCACGGGACGATGCCTCAAGTTGGATTTCTTTGCC-TCTGGCAGG 8234559 Query 145511 GGATATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACT-ACTACCTTTGTAATGTG 145569 || || || ||||| || || || ||| ||| | || ||| |||| | Sbjct 8234560 GGGTAGAAGTTTATATCGATGATCTTGTT-AAGATTCTTGGTAACCGTCTTGGTAA-CTT 8234617 Query 145570 CCGCAACTTT-TCAAAGTCAAACCGAGCCTCGTCAACGACCACACAGCTATTGACGGCGA 145628 || || ||| | || || | |||| | ||| | ||| | |||| ||||| Sbjct 8234618 CCTTAAGTTTCTTGAAATCGTATGTCTTCTCGGGAGTGACGA-ACA--TGTTGAGGGCGA 8234674 Query 145629 TCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATCTCGGCGC 145688 | || ||||| || || ||||| |||| || | | ||| | ||||| || | || Sbjct 8234675 TGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCACGATTTCTGTGC 8234734 Query 145689 ACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGT 145748 |||| ||||| || |||||||| || | ||| ||||| || || ||||||||||| || | Sbjct 8234735 ACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCAT 8234794 Query 145749 CCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTG 145806 |||| | |||||||| || ||||| || ||||| | ||| | || ||| Sbjct 8234795 CCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATGGCGAAC--CA 8234852 Query 145807 CAAGTCCTGCGCACGCACC-TGCTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGA 145865 |||| || || ||| | | | ||| | || ||||||| || || ||| || | Sbjct 8234853 CAAGGATTGAGCCTTAACCGTTCGGTTGGCA-CGACCCTCTTGCTCATACTTCTCATACA 8234911 Query 145866 GCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGGGACACATCA 145925 || || || | || | |||| ||||| || || || | |||||||| | Sbjct 8234912 ACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGGCATTTATGCGGACACATTA 8234971 Query 145926 GCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCCACAGCGCGT 145985 | ||||| | || ||||| | |||||||| |||||| | ||| || | |||||| |||| Sbjct 8234972 GTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGT 8235031 Query 145986 ACATCAAGTCGC--GCGCTTTGCAATCCTCAGCACCCATGTTTCGCTTCAAATTAAGCAC 146043 | | || |||| |||| | | ||||| || |||| ||| | | || | Sbjct 8235032 AGAACAGATCGCGGGCGCGATTC--TCCTCCTTGCCGGTGTTCTTCTTAAGTTCCAGGA- 8235088 Query 146044 ACT-ATAGATGTCCGCGTGCCACGGTTCAATATAGACGGCGAGGGCTCCTTTTCGTTT-- 146100 ||| | ||| ||||| |||||| || || | || | ||| | ||| || || || Sbjct 8235089 ACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGC 8235148 Query 146101 -GCCACCCTGGTCCACGTGACGTACCATGTTGTTAAAGACGCGCACCATGGGCTCGACGC 146159 ||| ||||| || || | || ||| ||||| ||||| | || |||||| | | || Sbjct 8235149 CGCCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAGGC 8235208 Query 146160 CGCTGGCTACGCCGTTCGT 146178 | ||| ||||||||| Sbjct 8235209 CATTGGAAGTGCCGTTCGT 8235227 Score = 125 bits (138), Expect = 7e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||||||| || || | || |||||||| |||||||| || || Sbjct 8331077 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 8331018 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| || || ||||||||||| ||| |||| | ||||||||| || ||||| Sbjct 8331017 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 8330958 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGC-TTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||||||||||| ||| | | || |||| | || | |||||| | | |||| Sbjct 8330957 ATTCCTTCTTTGTC-CTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGAC 8330899 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || || || || || || ||||| |||||||| Sbjct 8330898 CTCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 8330851 >seq5395 Length=2659632 Score = 156 bits (172), Expect = 4e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| |||| ||| ||||| || || | ||| |||||||| || |||||||| ||| Sbjct 975530 GCCACCACGCAGACGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 975589 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 975590 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 975649 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| ||| || ||| | | ||| | ||||||| || ||||| Sbjct 975650 GATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGAC 975709 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || ||||| ||||||||| Sbjct 975710 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAGATCTGCATG 975758 Score = 147 bits (162), Expect = 2e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | || ||||| || || | ||| |||||||| || |||||||||||| Sbjct 975758 GCCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGA 975817 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| |||||||| || ||| |||| | |||||||||||| || || Sbjct 975818 CAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGG 975877 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 |||||| || ||||| ||| || ||| | | ||| | || |||| || ||||| Sbjct 975878 GATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGAC 975937 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || || || || || || |||||||| |||||| Sbjct 975938 CTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCATG 975986 >seq5402 Length=10656099 Score = 134 bits (148), Expect = 1e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||| || || || || | |||||||||||| || |||||||| ||| | Sbjct 571639 CCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 571698 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || |||||| || |||||||| ||| |||| | ||||||||| || || ||| Sbjct 571699 AGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 571758 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || |||| || ||| | Sbjct 571759 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACC 571818 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| ||| ||||| || | || || || || |||||||| Sbjct 571819 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCAT 571865 Score = 125 bits (138), Expect = 7e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||| || || ||||| | |||||||||||| || ||||||||||| Sbjct 571411 CCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAA 571470 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | ||||||||| || || || Sbjct 571471 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 571530 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||| || ||| | | ||| | || || | | ||| | Sbjct 571531 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACC 571590 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || ||||| | ||| || || || |||||||| Sbjct 571591 TCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637 >seq5238 Length=3592495 Score = 132 bits (146), Expect = 5e-26 Identities = 166/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || ||||| | || | |||||||||||| || |||||||| ||| | Sbjct 2679460 CCACCGCGTAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2679401 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| ||||||||||| ||| |||| | ||||||||| || || ||| Sbjct 2679400 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 2679341 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| ||| || ||| | | ||| | || || | | ||| | Sbjct 2679340 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 2679281 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | ||| | ||| || ||||| || ||||| ||||| || |||||| Sbjct 2679280 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCATG 2679233 >seq5170 Length=6624210 Score = 102 bits (112), Expect = 8e-17 Identities = 114/151 (75%), Gaps = 6/151 (4%) Strand=Plus/Minus Query 51800 TGGCCTCTATGTTGCCGAGATCGCCCACGTGTCG---CTCGGCGGAGTTGGGTGCGCCGT 51856 ||||||| |||||||| || || |||| ||| || |||| ||| | || || |||| Sbjct 512454 TGGCCTCGATGTTGCCCAGGTCTCCCAGGTGACGGTTCTCGTCGGCG---GGAGCTCCGT 512398 Query 51857 GGTGTTTGCCAAGGGGATTAAAGTGCTCGCCGGCGGACGTGCACCCGTTGCTGGTGTCGC 51916 | | ||||| |||||| |||||| |||| ||| |||| |||||| || |||| | Sbjct 512397 GCTCCTTGCCGTAGGGATTGAAGTGCGGTCCGGACGACATGCAGCCGTTGGTGTTGTCCC 512338 Query 51917 CGAACTCGTGCACGTGAAAGCCGTGCAGTCC 51947 |||||||||| ||||| || |||||||| || Sbjct 512337 CGAACTCGTGTACGTGGAATCCGTGCAGGCC 512307 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471980213416320