Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_008348.1 Length=168041 Score E Sequences producing significant alignments: (Bits) Value seq5170 105 7e-18 seq5309 96.9 4e-15 >seq5170 Length=6624210 Score = 105 bits (116), Expect = 7e-18 Identities = 223/331 (67%), Gaps = 9/331 (3%) Strand=Plus/Plus Query 127542 TGCACGGGTTACACGTGCACGAGTTCGGCGACACGTCGAACGGTTGCACGTCGGCGGGGG 127601 ||||||| || ||||| ||||||||||| |||| | ||||| |||| |||| | || Sbjct 512311 TGCACGGATTCCACGTACACGAGTTCGGGGACAACACCAACGGCTGCATGTCGTCCGGAC 512370 Query 127602 AACACTTCAATCCCACCGGTATGGATCACGGAGCGC---CCAACGCGCTCGTTCGTCACG 127658 |||||||||||| ||| | ||| |||||||| | || ||| | | |||||| Sbjct 512371 CGCACTTCAATCCCTACGGCAAGGAGCACGGAGCTCCCGCCGACGAGAAC---CGTCACC 512427 Query 127659 TTGGCGACCTGGGCAACGTGGAGGCGGCTAGCAGCAATTCTTTGACCGAAGTCAACATCA 127718 | || |||||||||||| | || ||| | | || | | | ||| | |||||||||| Sbjct 512428 TGGGAGACCTGGGCAACATCGA---GGCCACCGGCGACTGTCCCACCAAGGTCAACATCA 512484 Query 127719 TCGACCACGTCATGTCTCTGTACGGACCGAACAGCGTCATCGGTAGGAGTCTGGTCGTGC 127778 |||| || | |||| ||| | ||||| ||||||| | | | || || | Sbjct 512485 CCGACTCGAAGATCACGCTGTTCGGCGCCGACAGCATCATCGGGCGCACCGTTGTGGTCC 512544 Query 127779 ACACGGATCGTGACGATCTCGGCCTGACCGATCATTATTTGAGCAAAACCACCGGCAACT 127838 || | ||| || |||||||||| | | || | ||||||| |||| || ||| Sbjct 512545 ACGCCGATGCCGATGATCTCGGCCAGGGTGGCCACGAGCTGAGCAAGTCCACGGGAAACG 512604 Query 127839 CGGGCGGTCGGTTGGGGTGCGGGATCATTGG 127869 | || | || | || ||||| |||| || Sbjct 512605 CAGGTGCCCGCATTGGCTGCGGCGTCATCGG 512635 >seq5309 Length=1473654 Score = 96.9 bits (106), Expect = 4e-15 Identities = 111/147 (76%), Gaps = 2/147 (1%) Strand=Plus/Plus Query 38445 TGGCCCAAGAGCATGAAGCAGACGCCGCAACAGTTGGCCGAGGCCGGCTTCTACTATTCG 38504 ||||| | || | | ||||||| ||| || ||| |||||||||| || |||| ||| || Sbjct 329729 TGGCCGAGGAACCTAAAGCAGAAGCCCCATCAGCTGGCCGAGGCGGGTTTCTTCTACACG 329788 Query 38505 GGCACCGGAGACCAGGTCAAATGTTTCTTTTGCGGCGGCGGCCTTAAGGACTGGGA-GCC 38563 ||| ||||||| ||| || ||| ||||||||| || || ||||||||||| | | Sbjct 329789 GGCGTTGGAGACCGCGTCCGCTGCTTCAGTTGCGGCGGTGGGCTCAAGGACTGGGACGAC 329848 Query 38564 TGCGGACGATCCGTGGGCGCAGCACGC 38590 | ||||| || |||| ||||||||| Sbjct 329849 AAC-GACGAGCCCTGGGAGCAGCACGC 329874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 537566085219080