Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_008518.1 Length=174059 Score E Sequences producing significant alignments: (Bits) Value seq5267 190 2e-43 seq5114 122 1e-22 seq5238 109 6e-19 >seq5267 Length=4296760 Score = 190 bits (210), Expect = 2e-43 Identities = 540/824 (66%), Gaps = 8/824 (1%) Strand=Plus/Plus Query 92806 TGGTATTCCCCAACttttttttCAAAGAAATTTGTCTTTCCTTCCAAAGATATCGAATTC 92865 ||||| || || || || || || ||||| || ||||| || |||| || ||| | | Sbjct 668458 TGGTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCC 668517 Query 92866 ACTAG--TGATTGGATTCTTGGCGTTATAATACTTTTCACCGATCAACTCGTACAATAAT 92923 | | ||| || ||||||| || || ||| || || || ||| || | Sbjct 668518 ATGAAGTTGAAGGGGTTCTTGGTATTGTAGATCTTGCCAACGCCCAGCTCCACCAGCAGA 668577 Query 92924 CTATCAGCTACAAATTCTATGTACTGAGACATCAAATCACAATTCATTCCTAGAAGACGT 92983 | ||| || || ||||| |||||||| ||||| | || |||||||| || | || | Sbjct 668578 CGATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATGCCGATGAGGTTT 668637 Query 92984 ACAGGTAGAGCGTCGGTCAAGAAATCTTTCTCGATTACAACGGCTTCTTTCAAGATTTCT 93043 || || | || ||||| | ||| || | ||| || | || || || | ||| || Sbjct 668638 ACGGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCGCGGATGATCTCG 668697 Query 93044 ATTA--CTCTACTATTTGGTGGTTTTTGTACGACATAATTGTACATTAAGCACG-CAAAG 93100 || | | || ||| || || || | | | | |||| | ||||| ||||| Sbjct 668698 ATGATGCGCTCGCGCCTGG--GTCGCTGCACCAAGTGCTGGAACATCA-GCACGGCAAAG 668754 Query 93101 TCGGTATGTAAACCTTCGTCTCGTGATATCAACTCATTGCTGAATGTTAAACCTGGTAAC 93160 ||| || | || ||||| || || || | ||| ||| ||| || | || || | | Sbjct 668755 TCGCAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCCCGGCATC 668814 Query 93161 AGTCCTCGTTTCTTGAGCCAAAATATTGAAGCAAAACTACCAGaaaaaaaTATACCTTCC 93220 || || || ||||| ||||| || || || || || || || || || || || || Sbjct 668815 AGACCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCG 668874 Query 93221 ACGGCTGCAAATGCCACAATACGTTCGGCAAAATTTGCGGAATTACTGCTGATCCATTTT 93280 ||||| ||||| || | || || || | || || || | || | |||||| Sbjct 668875 ACGGCGGCAAAGGCAATGATGCGCTCCCCGAAGTTGGCCGCCTTGGAGGAGATCCAGGAA 668934 Query 93281 AAAGCCCAATCGGCTTTTTTCTTAATACAAGGTAGTGTTTCGATAGCGTTAAATAGGTAA 93340 | ||||| || || || ||| | | || | ||| ||||| ||||| || ||||| Sbjct 668935 AGGGCCCAGTCCGCCTTGCGCTTCACAGCGGGCATTGTCTCGATGGCGTTGAACAGGTAT 668994 Query 93341 TCTCGCTCGTCCGAATCTCGTATGTATGTATCGATTAACAGAGAATACATTTCAGAATGG 93400 || |||| || || ||| || ||||| || ||||| | || | ||||| || || || Sbjct 668995 TCGCGCTGGTGCGGATCCCGGATGTAGGTGTCGATCAGCACACTGTACATCTCCGAGTGC 669054 Query 93401 ACATTCTCCATTGCAATTTGGAATCCGTAGAAACATCTAGCTTCCGTGATCTGCACTTCT 93460 || |||||||| || || ||||| || ||||| || | ||| |||||||||||||| || Sbjct 669055 ACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGCCTCCGTGATCTGCACCTCC 669114 Query 93461 TGAGAAAATCTCTCTACGAGATTTTCATTGACTATACCATCGGATGCTGCaaaaaaaGCC 93520 || || | ||| || || || || || || || |||||||| || || || || ||| Sbjct 669115 TGGCTGAAGCGCTCGACCAGGTTCTCGTTAACGATGCCATCGGAGGCGGCGAAGAAGGCC 669174 Query 93521 AATATATGCTTTATAAAATGTTTCTCATCATCTTTAAGCTTATCCCAATCGGATAGATCT 93580 | | ||| || || || ||| || || || || | ||| |||| || || Sbjct 669175 AGCACGTGCGAGATGAAGTGGCGCTCGTCGTCCTTCAGGCGGTGCCAGTCGGTCAGGTCC 669234 Query 93581 TTTGAAAGATCGACTTCTTCGACAGTCCAAAACGATGCTTCTGC 93624 || || ||||| || || || || ||||| || || || || || Sbjct 669235 TTGGAGAGATCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGC 669278 >seq5114 Length=3386121 Score = 122 bits (134), Expect = 1e-22 Identities = 81/89 (91%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||||||||||||||||| |||||||||||||||||||||| |||||||| | | || Sbjct 444963 ACAGTCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGA 445022 Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAA 126349 ||||||||||||||||||||||||||||| Sbjct 445023 GCGTGGGTTCGAACCCCACACCTGACAAA 445051 Score = 109 bits (120), Expect = 6e-19 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGAG 126321 ||| ||||||||||||| |||||||||||||||||||||| |||||||| | | ||| Sbjct 287130 CAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGTGAGAGAG 287189 Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348 ||||||||||||||||||||||| ||| Sbjct 287190 CGTGGGTTCGAACCCCACACCTGGCAA 287216 >seq5238 Length=3592495 Score = 109 bits (120), Expect = 6e-19 Identities = 77/87 (89%), Gaps = 2/87 (2%) Strand=Plus/Plus Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCC--TCGGGA 126320 |||| ||||||||||||| |||||||||||||||||||||| |||||||| | | || Sbjct 1460255 ACAGCCAGGTTGGCCGAGCGGTCTAAGGCGCCAGATTTAAGCTCTGGTTCTCGAGAGAGA 1460314 Query 126321 GCGTGGGTTCGAACCCCACACCTGACA 126347 |||||||||||||||||||||||| || Sbjct 1460315 GCGTGGGTTCGAACCCCACACCTGGCA 1460341 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 556822355722520