Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq5396 248 7e-61 seq5402 116 3e-21 seq5395 113 4e-20 seq5238 105 6e-18 >seq5396 Length=9561034 Score = 248 bits (274), Expect = 7e-61 Identities = 1039/1627 (64%), Gaps = 26/1627 (2%) Strand=Plus/Plus Query 128778 CTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTACATGCC 128837 ||| |||||||| || | ||| |||| || || ||||| ||||||| |||||||| || Sbjct 8233758 CTTATCCACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTCC 8233817 Query 128838 TGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTAGGTGGG 128897 ||||| | ||| |||||| | | | ||| || | || | | | ||| | || Sbjct 8233818 AGTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTGG 8233877 Query 128898 TTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATCGGCAGC 128957 | || | ||| || || || ||||| ||||| || || | || ||||| || || Sbjct 8233878 CTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGC 8233937 Query 128958 CATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCTCACGTG 129017 ||| ||| |||||| ||||||||||| |||||||| || || | || | Sbjct 8233938 CATCTTAATGGTCGACTTCACTGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCTT 8233997 Query 129018 TTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTTTCGCAT 129077 | || || | ||||| ||||| | ||| || | | ||| |||| ||| ||| Sbjct 8233998 CTGGGGGATGGCCTCAATATTCTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCAT 8234057 Query 129078 CTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTATTACTTG 129137 | |||| |||| | ||| | | | || ||| | | ||| | ||||| Sbjct 8234058 GTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTG 8234117 Query 129138 AAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAACGATTC 129197 || || || | || ||| |||| ||||| || | ||| ||||||| || ||||| Sbjct 8234118 GAATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAGATTC 8234177 Query 129198 ATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCAAAGCGAGTT 129257 |||||||| | ||||| || || | ||| |||||||| || || | || ||||| Sbjct 8234178 GTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGTT 8234237 Query 129258 TCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCGATGTGGG 129317 || | ||||||||| || ||| | || | || ||||||||| | ||| || Sbjct 8234238 CCGGACACCGTGCTGCTTGATGGACTCCTTCAGTTTCTGCCAGTCCCAAAGGTTTGTCGG 8234297 Query 129318 TGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAAAGTAGGA 129377 | | ||||| |||||| |||| || || || ||||||| |||| Sbjct 8234298 CACTTTGTCCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGACTTCCCTCATAGGT 8234357 Query 129378 ATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAAAATAAAT 129437 || | ||||| | |||| ||| ||||| ||||||| ||||| | || || Sbjct 8234358 TTCATATGGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAGAT 8234417 Query 129438 TGTTTCGGCAAT-TTTGGTG-TTCAACACTTTGGCCTGGTCGCTTTCGTACGGCATACGC 129495 |||||| ||| | || || ||||| | ||| | || ||||| || || | |||| Sbjct 8234418 GGTTTCG--AATATCTGCTGATTCAAGAGACCGGCTTCTTCACTTTCATAGGGGAAACGC 8234475 Query 129496 AACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTTTTCTA 129555 | | | | ||| || || || || | ||| | || | ||| ||||| | Sbjct 8234476 ATAAGAATTAGGGCGTCAGCGAATCCCTGGACACCGATGCCCACGGGACGATGCCTCAAG 8234535 Query 129556 TTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTAAATTC 129615 |||||||| | |||| || ||| ||| |||| || || || || ||||| | |||| Sbjct 8234536 TTGGATTTCTTTGCCTCTGGCAGGGGGTAGAAGTTTATATCGATGATCTTGTTAAGATTC 8234595 Query 129616 TTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTACATCGATG 129675 ||| || | || || || | || | | | |||| ||| | || | ||| Sbjct 8234596 TTGGTAACCGTCTTGGTAACTTCCTTAAGTTTCTTGAAATCGTA--TGTCTTC-TCGGGA 8234652 Query 129676 TCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGTTTTTGTCA 129735 ||| || |||| || || ||||| |||||||| ||| | |||| Sbjct 8234653 GTGACGAACATGTTGAGGGCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAG 8234712 Query 129736 CTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAATGCTTTTGA 129795 |||||| || ||||| | |||||| || || || |||||||| | || || || Sbjct 8234713 GAGTACTCCACGATTTCTGTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGG 8234772 Query 129796 TTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTTCGACTTGC 129855 || || ||| ||||||| ||||| || ||| |||||| || | || |||||||| || Sbjct 8234773 TTGCTCTTCCTGTTGCAGGCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGT 8234832 Query 129856 GTTTCGACAATGGTCCTGAACAAGTCTCGAGCCTTGATCTGTC--TT---ACAAATTTGC 129910 | || | ||||| ||||| | ||||||| | | || || || | | Sbjct 8234833 GCCTCAATAATGGCGAACCACAAGGATTGAGCCTTAACCGTTCGGTTGGCACGA-----C 8234887 Query 129911 CACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGTCGA-GC 129969 | || ||| || | |||||| | ||| ||||| ||| || || | || Sbjct 8234888 CCTCTTGCTCATACTTCTCATACAACTTTTCGAATTCATCGCCCCACACATCGTGAAGGC 8234947 Query 129970 AACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCGTTTCATA 130029 | ||| ||| | |||||||||| | ||| ||||| || ||||| || |||||| Sbjct 8234948 CAGGGC-ATTTATGCGGACACATTAGTGACCAATCTCCATTGGCCTCGACGCGCTTCATA 8235006 Query 130030 AACAAATCGGGTACCCACAGGGCGTACAACAAATCTC--GCGCTTTTCTATCCTCGGCAC 130087 || | |||||||| |||||||||||| |||| ||| | |||| ||| ||||| | Sbjct 8235007 AAGAGATCGGGTATCCACAGGGCGTAGAACAGATCGCGGGCGCGATTC--TCCTCCTTGC 8235064 Query 130088 CCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAACATAAA 130147 | |||| || ||||| ||||| || | | ||| | |||||| || || | |||| Sbjct 8235065 CGGTGTTCTTCTTAAGTTCCAGGAACTCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAA 8235124 Query 130148 TTGCCATTGCGCCCTTCCGTTTGCCCCCT---TGGTCAACGTGGCGCACGGCATTGTTGT 130204 | || | || || || ||||| ||| || || || | |||| | |||||||| Sbjct 8235125 TGGCAAAGGCACCGGGACGCTTGCCGCCTCCCTGATCGACATAGCGCGCCACATTGTTGA 8235184 Query 130205 AGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAAACTGC 130264 |||| | |||||| | ||| || |||| |||||||| |||| ||| | ||| Sbjct 8235185 AGACCCTCAACATGGGAACCAGGCCATTGGAAGTGCCGTTCGTGCCGCAAATCGAGGTGC 8235244 Query 130265 CACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATATCAACG 130324 | || || | | ||| ||| | || || ||||||||| | | || || |||| | Sbjct 8235245 CCTTTGCTCGGATGCAATGGACGTTAAGTCCAATGCCGCCGGCCGACTTCGAGATCATGG 8235304 Query 130325 CGCAATCGCGTAGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTAGGAGGA 130384 |||| | | | | | ||||||| |||| ||| || | ||| | | ||||| Sbjct 8235305 CGCACTGCTCCACGGACTTAAAAATGCCCTCGATGGAGTCGGCTGTCATGGTCAAGAGGA 8235364 Query 130385 AACACGA 130391 |||| || Sbjct 8235365 AACAAGA 8235371 >seq5402 Length=10656099 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || ||||| ||||| || || |||| || || ||||| | | Sbjct 571637 ATGCAGATCTTTGTCAAGACTTTGACCGGCAAGACCATCACCCTGGAGGTGGAGCCATCT 571578 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || || || ||||||||||| ||||| || ||||| Sbjct 571577 GACACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATTCCCCCAGATCAG 571518 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||| | || ||||||||| Sbjct 571517 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGACGCACTCTTTCTGATTACAAC 571458 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || || ||| | ||||| ||| | || |||| || || Sbjct 571457 ATCCAGAAGGAGTCGACCTTGCATTTGGTTCTCCGTCTGCGAGGTGG 571411 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||| || ||||| || || || || ||||| || | || | || ||||| || Sbjct 571868 AAAATGCAGATCTTTGTGAAGACCTTGACTGGTAAGACCATTACCTTGGAGGTGGAGCCC 571809 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| || | || || | || || || || ||||||||||| || || || ||| Sbjct 571808 TCCGACACGATTGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGAT 571749 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| || | ||||| || ||| | ||||| ||| Sbjct 571748 CAGCAGCGTCTGATCTTCGCCGGCAAGCAACTGGAGGACGGACGTACCCTGTCCGACTAC 571689 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || || || || ||| | || || || | || ||||||| ||| Sbjct 571688 AACATCCAGAAGGAGTCGACCCTTCACTTGGTCCTCCGTCTGCGCGGTGGT 571638 >seq5395 Length=2659632 Score = 113 bits (124), Expect = 4e-20 Identities = 152/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 || ||||||||||| || || || | || || || || |||| ||||| || || || Sbjct 975988 AACATGCAAATTTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCC 975929 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 |||| ||| | || || | || || || || ||||||||||| || || || || Sbjct 975928 TCCGACACCATCGAGAATGTTAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGAC 975869 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || ||||| || ||| | ||||| |||||| | ||||||||| Sbjct 975868 CAGCAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGATTAC 975809 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| || || || |||||| | || || || Sbjct 975808 AACATCCAGAAGGAGTCCACCCTCCACTTGGT 975777 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || | || || || || |||| ||||| || || || || Sbjct 975757 ATGCAGATCTTCGTGAAGACCCTGACTGGCAAGACCATCACCCTTGAGGTCGAGCCCTCC 975698 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | || | | || || || || ||||||||||| || || || || || Sbjct 975697 GATACCATCGAGAACGTGAAGGCCAAGATCCAGGACAAGGAGGGAATCCCCCCAGACCAG 975638 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || ||||| || ||| | ||||| |||||| | ||||| |||||| Sbjct 975637 CAGCGTCTGATCTTCGCCGGAAAGCAGCTGGAGGACGGACGCACCCTGTCCGACTACAAC 975578 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || || |||||| | || || || | || |||| || || Sbjct 975577 ATCCAGAAGGAGTCCACCCTCCACTTGGTGCTCCGTCTGCGTGGTGG 975531 >seq5238 Length=3592495 Score = 105 bits (116), Expect = 6e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| || || ||||| | ||||| || || |||| | || ||||| | | Sbjct 2679234 ATGCAAATCTTCGTGAAAACCCTCACCGGCAAGACCATCACCTTGGAGGTGGAGCCTTCG 2679293 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || || | || || || || ||||||||||| || || || ||||| Sbjct 2679294 GACACCATCGAGAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCCCCAGATCAG 2679353 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || || |||||||| ||| | ||||| ||||||| | ||||| |||||| Sbjct 2679354 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGCACCCTGTCCGACTACAAC 2679413 Query 22399 ATTCAAAAAGAATCCACC 22416 || || || || || ||| Sbjct 2679414 ATCCAGAAGGAGTCGACC 2679431 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419699747452495