Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq5396 161 2e-34 seq5395 161 2e-34 seq5238 161 2e-34 seq1972 161 2e-34 seq5402 152 9e-32 seq5267 100 5e-16 >seq5396 Length=9561034 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || |||| |||||||| | |||||||| || || |||||||| || ||| Sbjct 8331077 CCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAG 8331018 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||||||| | |||||| || ||||| || || | || || || || ||| Sbjct 8331017 AGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGA 8330958 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||| ||||| |||||||| || ||||| ||||| || || | | ||| || Sbjct 8330957 ATTCCTTCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACC 8330898 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| || |||||||||||||| ||||| |||||||| Sbjct 8330897 TCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCAT 8330851 >seq5395 Length=2659632 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||| | |||||||| || |||||||| || |||||||| |||||||| Sbjct 975759 CCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGAC 975818 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || ||||| || || Sbjct 975819 AGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGG 975878 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||||| || |||||||||||| | | || || Sbjct 975879 ATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACC 975938 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || || || |||||||| ||||| || ||||| Sbjct 975939 TCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 975985 >seq5238 Length=3592495 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||| | |||| ||| || || ||||| || |||||||| || ||||| Sbjct 2679460 CCACCGCGTAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2679401 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || || || || || Sbjct 2679400 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 2679341 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| || |||||||||||| | | || || Sbjct 2679340 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACC 2679281 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||||||||||||| || || |||||||| || ||||| || ||||| Sbjct 2679280 TCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234 Score = 116 bits (128), Expect = 7e-21 Identities = 105/132 (80%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 268363 GCGAGTGATTTTTCGGGTCACGAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAG 268422 ||| |||||||| | |||||| || ||||||||||| | ||||||||||||||||| || Sbjct 398686 GCGGGTGATTTTCCTGGTCACAAAGTTCTCGCCACGTCGTGGGCTCTCGTGGTTGAACAG 398745 Query 268423 GATGCCGTTGCACGCGAACATGCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGC 268482 |||||| ||||| ||| ||||| || ||||| |||||||| | ||| ||||| | | Sbjct 398746 GATGCCATTGCAAGCGTACATGTTGTAGGCCTCGCGGTAGTTGATGACGATCCAGAAGCC 398805 Query 268483 AAACATCTTTGC 268494 ||||||| || Sbjct 398806 GTACATCTTGGC 398817 Score = 86.0 bits (94), Expect = 1e-11 Identities = 189/281 (67%), Gaps = 2/281 (1%) Strand=Plus/Plus Query 268514 GGATGGAAGGGCGTCGTGATCTTT-TGAGGGATTTCTCGGACTTTGCCAAAGAGCTCGGA 268572 |||| |||||| ||| || || || || || | || ||||| ||| | ||||| || Sbjct 398896 GGATAGAAGGGTGTC-TGTTCGTTCTGTGGCGTCTCCACCACTTTCCCATACAGCTCCGA 398954 Query 268573 GGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCAGATTCGGATTGCCTCGAG 268632 || || |||||||||||||| || ||||| | || || | || || || || || Sbjct 398955 AGTGGAGGCTTGGTAGAACTTCACCGTCTTTTCCATGCCACAAGTGCGAATGGCGTCCAG 399014 Query 268633 CAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCTCGAATGACAC 268692 | || | || |||| | ||||||| || || || || || | ||||| || || Sbjct 399015 GATGCGCAACGTACCCACGGCATCCACCTCGGCCGTGTATTCGCTAAGGTCGAAGGAGAC 399074 Query 268693 CTGGACATGGCTCTGGGCGCCCAGGTTATAAACCTCATCCGGTTTGACCTGCTGCACGAT 268752 || ||||||| || || |||| || || | ||| || |||||| | | ||| Sbjct 399075 CTTGACATGGGATTGCGCCGCCAGATTGTAGATCTCCGTGGGCTTGACCATATTGATGAT 399134 Query 268753 CTTCACGAGGTTCGTTGAGTCGGTGAGGTCTCCGTAGTGCA 268793 |||||| ||| | | ||| || | ||| |||||||||| Sbjct 399135 CTTCACCAGGCTGCTGCTGTCCGTCATGTCGCCGTAGTGCA 399175 >seq1972 Length=1348 Score = 161 bits (178), Expect = 2e-34 Identities = 190/257 (74%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 186004 GGTGTTCGATGTCACGATGGCGCCAATCATGGTCTGTGGAATGCCCTCGAAGTTTGCGAG 186063 |||||| || |||||||||||||| |||| | |||| || | | || | |||| || || Sbjct 893 GGTGTTGGACGTCACGATGGCGCCGATCAGGTTCTGCGGCACGGCCGAGTAGTTGGCCAG 834 Query 186064 CAGCTGCTTCGTGTCCTTGGGGAAGCAGTAGCCGCCGTAGCCGAAGCTCGGGTTGCAATA 186123 ||||||||| ||||||||||| | ||||||||| ||||||||||||||||||||| || Sbjct 833 CAGCTGCTTGGTGTCCTTGGGCAGGCAGTAGCCACCGTAGCCGAAGCTCGGGTTGTTGTA 774 Query 186124 GCCTCCGCCAATACGTGGCTCGTGCGTGATGCCCTCGATGATGTCCTTTGCATTCAGACC 186183 | ||||| || || || | | ||| |||||||| || | ||||| || Sbjct 773 GTGCGTGCCAACGCGCGGGTCCAGGCACACGCCGTCGATGATCTCGCGGGTGTTCAGGCC 714 Query 186184 ATTCACCATTGCAAACGAGTCGAGCTCATTGAAAAACGACACGCGCATCGCGAGGTACGT 186243 | | | ||| | | ||||||||| ||||| | | |||||||||||| ||||| || Sbjct 713 GTGCGTCTGGGCATAGGTGTCGAGCTCGTTGAAGTAGGCCACGCGCATCGCAAGGTAGGT 654 Query 186244 ATTCGCAAACAACTTGA 186260 || || |||| ||||| Sbjct 653 GTTGGCGAACAGCTTGA 637 >seq5402 Length=10656099 Score = 152 bits (168), Expect = 9e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | ||||| || | || ||||| || |||||||| ||||| | Sbjct 571409 TTCCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAG 571468 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | || || || | |||||| |||||||| || || | || || || || | Sbjct 571469 AAAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGG 571528 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| || |||||||| || ||||| ||||| ||| |||||||||||| | || || | Sbjct 571529 GAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCA 571588 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| ||||||||| || || || | |||||||| || |||||||| Sbjct 571589 CCTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637 >seq5267 Length=4296760 Score = 100 bits (110), Expect = 5e-16 Identities = 522/823 (63%), Gaps = 40/823 (5%) Strand=Plus/Plus Query 9971 CTCGAAGAAGTTGGACTTGCCCTCGAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTC 10030 |||||||||||||| |||||| || || || || | ||||||||||| |||||||||| Sbjct 668478 CTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATGAAGTTGAAGGGGTTCTT 668537 Query 10031 GGCGCCAAACTGCTTGGGGTAACCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGAT 10090 || | |||| || || | | | || || |||||||| ||||| Sbjct 668538 GGTATTGTAGATCTTGCCAACGCCCAGCTCCACCAGCAGACGATCCGCCACGAATTCGAT 668597 Query 10091 GTACTGGCTCATCAGGTCCGAGTTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAAT 10150 |||||| ||| ||||| | |||||||| || | | ||| | ||| ||| | Sbjct 668598 GTACTGCGACATGAGGTCGCAATTCATGCCGATGAGGTTTACGGGCAAGGCATCGGTGAG 668657 Query 10151 GAAGTCCTTTTCGTTGGCGACCGCTTC---------CTCGACGATGCTCTTTACCACGTC 10201 ||| |||| || |||| || || || ||||| ||||| || | || | Sbjct 668658 GAACTCCTGCTCTATGGCCACAGCATCGCGGATGATCTCGATGATGCGCT----CGCGCC 668713 Query 10202 AAGGGACAGCTTGTTCTCGAGCTTCGAATACAGGAGCTCTCCAAACTGCTGGTGGAGGCC 10261 ||| | ||| | | ||| ||| || ||| | |||| | ||| ||||| Sbjct 668714 T-GGGTC-GCTGCACCAAGTGCTG-GAA--CATCAGCACGGCAAAGTCGCAGTGCAGGCC 668768 Query 10262 CTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCCCCGGTTGCG 10321 |||||||||| ||||| ||||||||| || ||| || ||||| || || || || Sbjct 668769 CTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCGCGCTTCTT 668828 Query 10322 CAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGA--CCCTCCACGCACACCCAG 10379 |||||||||||||| | ||| ||| ||| ||||| ||||| ||| | || Sbjct 668829 CAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAA--GAAGATGCCCTCGACGGCGGCAAAG 668886 Query 10380 GCGACGAGGCGCTCTGCGAAGGAGCGGTCGCGCGAAAAGTATTTCGAGG------CCCAC 10433 || | || |||||| ||||| | | ||| | || | || ||| |||| Sbjct 668887 GCAATGATGCGCTCCCCGAAGTTG--GCCGC-CTTGGAGGAGATCCAGGAAAGGGCCCAG 668943 Query 10434 GCTGCCTT---CTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAGAGCTTGTTACGC 10490 | ||||| ||| ||| || || || |||||||| || | ||| || | | ||| Sbjct 668944 TCCGCCTTGCGCTT---CACAGCGGGCATTGTCTCGATGGCGTTGAACAGGTATTCGCGC 669000 Query 10491 TCGGTCTCGTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCTC 10550 | | | ||| || | || | |||| ||| ||| ||| ||| || Sbjct 669001 TGGTGCGGATCCCGGATGTAGGTGTCGATCAGCACACTGTACATCTCCGAGTGCACGTTC 669060 Query 10551 TCATTGTACCCCTGGTAAGCGTAGAACATACGTGCCGAGGGGTCCGTGACTTCCTCGGCA 10610 || || |||| | | ||||| || ||| | | | || |||| | Sbjct 669061 TCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGCCTCCGTGATCTGCACCTCCTGGCTG 669120 Query 10611 AAGTTGTTGTTCAGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATG 10670 ||| | | ||||||||| | || ||||||||| | | || |||||| | || | | Sbjct 669121 AAGCGCTCGACCAGGTTCTCGTTAACGATGCCATCGGAGGCGGCGAAGAAGGCCAGCACG 669180 Query 10671 TGCTTGATGAAGTGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGG 10730 ||| ||||||||||||||| || || ||||| | ||||||| || |||| | Sbjct 669181 TGCGAGATGAAGTGGCGCTCGTCGTCCTTCAGGCGGT---GCCAGTCGGTCAGGTCCTTG 669237 Query 10731 TTGAGCTGGACCTCCTCCACGGTCCAGAAAGTGGCAACGGCCT 10773 ||| | |||||||||||||||||||||| ||| | |||| Sbjct 669238 GAGAGATCCACCTCCTCCACGGTCCAGAAAGAGGCCTCAGCCT 669280 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921558773493560