Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq4739 89.7 1e-14 >seq4739 Length=5756469 Score = 89.7 bits (98), Expect = 1e-14 Identities = 108/147 (73%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 3334 CCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTTCACAAATACGGTCCTTCG 3393 |||||| || |||||||| | |||| ||||| || ||||| |||||||| || Sbjct 1691623 CCCATGGCCCGGGTCTTTCCGAAGGTCACCAAGTGTACGTTCCACAAGTACGGTCCCTCC 1691564 Query 3394 GGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAGAACGTGGTCAACGAGAAG 3453 ||| || | || | ||| || || ||| | || || |||| | |||||||||||| Sbjct 1691563 GGCAGTGTGCAGAAGTTCGACGGTCTGTGCGTGCTGCCCCTGAACATTGTCAACGAGAAG 1691504 Query 3454 ATCTACATTTTCCTCTGGTTCTGGTTC 3480 |||||| | ||||| |||||||||||| Sbjct 1691503 ATCTACGTGTTCCTGTGGTTCTGGTTC 1691477 Score = 86.0 bits (94), Expect = 2e-13 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 3367 TGTACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATC 3426 || || || ||||| |||||| | || ||||| ||| | || |||| ||||||||| Sbjct 1719531 TGCACCTTCCACAAGTACGGTGCCTCCGGCTCGCTGCAGAAGCACGACTCCCTCTGCATC 1719590 Query 3427 CTCCCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCT 3481 || ||| |||| | || |||||||||| ||| | ||| ||||||||||||||| Sbjct 1719591 CTGCCGCTGAACATTGTGAACGAGAAGACGTACGTGTTCATCTGGTTCTGGTTCT 1719645 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12479246110500