Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq5267 390 2e-103 seq5396 316 4e-81 >seq5267 Length=4296760 Score = 390 bits (432), Expect = 2e-103 Identities = 584/819 (71%), Gaps = 19/819 (2%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||||| |||||| | || || |||||||| | ||| |||| ||| | |||| Sbjct 669264 CTGGACCGTGGAGGAGGTGGATCTCTCCAAGGACCTGACCGACTGG----CACCGCCTGA 669209 Query 42395 -GAACGAAAAGTTT---TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 | |||| || ||| || || | |||||||||||||||||||| || |||| Sbjct 669208 AGGACGACGAGCGCCACTTCATCTCGCACGTGCTGGCCTTCTTCGCCGCCTCCGATGGCA 669149 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | || || |||||||||| | | |||| | ||||||||| | ||||| |||| Sbjct 669148 TCGTTAACGAGAACCTGGTCGAGCGCTTCAGCCAGGAGGTGCAGATCACGGAGGCTCGCT 669089 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||| ||||||||||| ||||| |||||||||||||| ||| ||||| ||| Sbjct 669088 GCTTCTATGGCTTCCAGATCGCCATGGAGAACGTGCACTCGGAGATGTACAGTGTGCTGA 669029 Query 42571 TCAACACGTACATCCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGA 42630 || |||| ||||||| |||||| | |||| | |||||||| ||||| ||||| | Sbjct 669028 TCGACACCTACATCCGGGATCCGCACCAGCGCGAATACCTGTTCAACGCCATCGAGACAA 668969 Query 42631 TGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCC-CGACG-- 42687 ||||| | ||| |||||||||||||| || ||||||| ||| | || Sbjct 668968 TGCCCGCTGTGAAGCGCAAGGCGGACTGGGCCCTTTCCTGGATC--TCCTCCAAGGCGGC 668911 Query 42688 CAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCG 42747 |||| ||||| ||| | | | |||||| ||||||||||||||||||||||| ||| Sbjct 668910 CAAC-TTCGGGGAGCGCATCATTGCCTTTGCCGCCGTCGAGGGCATCTTCTTCAGCGGCA 668852 Query 42748 CCTTCGCCTCCATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCG 42806 |||||||||||| |||||||| ||| || ||| | |||||| ||||| |||||||| Sbjct 668851 GCTTCGCCTCCATTTTCTGGCTGAAGAAGCGCGGTCT-GATGCCGGGACTGACCTTCTCC 668793 Query 42807 AACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCG 42866 ||||| |||||| | | |||||||| ||||| | ||||||||| || ||||| | Sbjct 668792 AACGAGCTCATCTCCCGCGACGAGGGCCTGCACTGCGACTTTGCCGTGCTGATGTTCCAG 668733 Query 42867 AGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTG 42926 ||| | ||| ||| | ||||| || | |||||| || || ||| Sbjct 668732 ---CACTTGGTGCAGCGACCCAGGCGCGAGCGCATCATCGAGATCATCCGCGATGCTGTG 668676 Query 42927 GAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCAC 42986 | || ||| ||||||||||||| | | ||||||| ||| |||||||||| | Sbjct 668675 GCCATAGAGCAGGAGTTCCTCACCGATGCCTTGCCCGTAAACCTCATCGGCATGAATTGC 668616 Query 42987 GACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTC 43046 |||||||||| |||||||| | | ||| || || | ||| ||| || |||| | Sbjct 668615 GACCTCATGTCGCAGTACATCGAATTCGTGGCGGATCGTCTGCTGGTGGAGCTGGGCGTT 668556 Query 43047 AGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGC 43106 || ||||||| || | ||||||| |||| ||||||| |||||| |||| ||| Sbjct 668555 GGCAAGATCTACAATACCAAGAACCCCTTCAACTTCATGGAGATGATCTCGCTGGACGGC 668496 Query 43107 AAGACCAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 ||||||||||| ||||||||| || | ||| |||||| Sbjct 668495 AAGACCAACTTCTTCGAGAAGAAGGTGGGCGAGTACCAG 668457 >seq5396 Length=9561034 Score = 316 bits (350), Expect = 4e-81 Identities = 1092/1677 (65%), Gaps = 76/1677 (5%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGG-GTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 ||||| ||||||| | || || | | || | ||| || | |||||||||||| || || Sbjct 8233763 CCACGGTGAACTGAATGGCGTTTG-CAGCTGGCTTTGTGCGCAGGTAGTACATTCCAGTT 8233821 Query 243794 TTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 ||||| ||| ||||| | || ||| |||| ||| || || | ||| || ||| Sbjct 8233822 TTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTT-TCCAT----AG-TTT 8233875 Query 243854 GGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGC 243913 || || || ||| || ||||| ||||| ||||| || | ||| | | || Sbjct 8233876 GGCTCTGCC----ACATGAAT--GTTGAACGACTGACTCTGATCTATGAACGCTCCTCGA 8233929 Query 243914 TCTGCGGCCATGGTGATGAGGTC--CTTC--TGAGATATCTCATACGCCGTCTTGTA--G 243967 ||||||||||| | ||| ||| |||| |||||| || || || || ||||| | Sbjct 8233930 TCTGCGGCCATCTTAATG--GTCGACTTCACTGAGATTTCCCACACT--GTTTTGTACAG 8233985 Query 243968 ATGGGCTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTG-TGGACGAT 244026 || | || | || ||||| | || || ||||| | |||||| || |||| || Sbjct 8233986 ATCGCG--GACCTTCTGGGGGATGGCCTCAATATTCTGGATTGAGCCCCTGCTGGAA-AT 8234042 Query 244027 GAGCTGGGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCC---AGCGCCTCGACCAG 244083 || ||| | ||||| |||| ||||| | ||| ||||| || || | || Sbjct 8234043 GATTTGGTTCTTCATGTCGTCGTCCCACAAGTCCA---GCTCCGTTAGGTCCCTTAACAA 8234099 Query 244084 GTGCCTGTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCT 244143 || ||| ||||| || || || || ||||| || || | ||||| | | | | Sbjct 8234100 ATGATGGTTAACCACTTGGAATTCGCCAGACAGAACTCGCC--TGGTATAAATATTCGTT 8234157 Query 244144 GAG--CGGCTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATG 244201 | | |||||||| || ||||||||| || || || ||| |||||| ||||| Sbjct 8234158 GTGTACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATA 8234217 Query 244202 GGCGACACCAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTC--TGAGCTCGT 244259 |||| |||| ||| ||||| || |||||| || |||| || || | || | | Sbjct 8234218 GGCGCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGATG--GACTCCTTCAGTTTCT 8234275 Query 244260 TCCAGTCCCACATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCA 244319 ||||||||| | | | || | | || | |||||||||| ||||||| | Sbjct 8234276 GCCAGTCCCAAAGGTTTG-----TCGGCACTTT----GTCCCACATGTCGTACTGCAGAA 8234326 Query 244320 GCCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCT 244379 || ||||| ||||| || ||||| ||||| || || |||||| ||||||||| | Sbjct 8234327 TGCCTTTGCTCACGGGACTTCCCTCATAGGTTTCATATGGGCCGTCGATCTGGGCCAGTT 8234386 Query 244380 TACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGC 244439 ||| || | || |||||| ||||||||||||| ||||| ||| || |||| | | Sbjct 8234387 CACAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCGAATATCTGCTGATTCAAGAGAC 8234446 Query 244440 GGGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCA 244499 ||| | | | |||||| | ||| | || | | |||| || | |||||| | Sbjct 8234447 CGGCTTCTTCACTTTCATAGGGGAAACGCATAAGAATTAGGGCGTCAGCGAATCCCTGGA 8234506 Query 244500 CGCCGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAA 244559 | |||||||| | ||| | || | | |||||| | | || || |||| |||||| | Sbjct 8234507 CACCGATGCCCACGGGACGATGCCTCAAGTTGGATTTCTTTGCCTCTGGCAGGGGGTAGA 8234566 Query 244560 AGTTGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCA 244619 |||| ||||| | |||||| || || ||| | | | | || || || Sbjct 8234567 AGTTTATATCGATGATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTCCTTAAGTT 8234626 Query 244620 GCT-GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGG 244678 || |||| ||||| | | ||||| || |||| | ||| ||||||| Sbjct 8234627 TCTTGAAA-------TCGTATGTCTTCTCGG-GA--GTGA------CGAACATGTTGAGG 8234670 Query 244679 GCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCG 244738 |||| | |||| ||||||||| || | ||| |||| || ||||| || || || Sbjct 8234671 GCGATGGATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCACGATTTCT 8234730 Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 ||||| | ||| ||||||||||||||||| | | ||| || ||| ||| ||||||| Sbjct 8234731 GTGCACAAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAG 8234790 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTC 244858 || ||||| | |||||| |||| || || |||| ||| || | | | | | | Sbjct 8234791 GCATCCTTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATGGCGAAC 8234850 Query 244859 CAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTAC 244918 || | | |||||| ||||| | | || |||||| ||| || ||| Sbjct 8234851 CACAAGGATTGAGCCTTAACCGTTCGGTTGGCACGACCCTCTTGCTCATACTTCTCATAC 8234910 Query 244919 AGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGGCACATG 244978 | ||||| || |||||| || |||| ||||| ||||| ||| ||||| Sbjct 8234911 AACTTTTCGAATTCATCGCCCCACACATCGTGAAGGCCAGGGCATTTATGCGGACACATT 8234970 Query 244979 AGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCC 245038 || ||| || || | ||| ||| | || ||| ||||| ||||| ||||| ||||| Sbjct 8234971 AGTGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCG 8235030 Query 245039 TGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAG 245098 | ||| || || | || | | ||| ||| ||| ||||||||| | || |||| || Sbjct 8235031 TAGAACAGATCGCGGGCGCGATTCTCCTCCTTGCCGGTGTTCTTCTTAAGTTCCAGGAAC 8235090 Query 245099 TCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTG 245158 ||||||||||| |||||||||||||| ||| | || | ||| ||||| |||||| | Sbjct 8235091 TCAAAGACGTCCGAGTGCCAGGGCTCCAGGTAAATGGCAAAGGCACCGGGACGCTTGCCG 8235150 Query 245159 CCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 |||||||| || || | | | | |||||||| | || | || || | ||| Sbjct 8235151 CCTCCCTGATCGACATAGCGCGCCACATTGTTGAAGACCCTCAACATGGGAACCAGGCCA 8235210 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGGAC 245278 || || |||||| ||||| || ||| |||||| | | || ||| |||||| Sbjct 8235211 TTGGAAGTGCCGTTCGTGCCGCAAATCGAGGTGCCCTTTGCTC---GGATGC-AATGGAC 8235266 Query 245279 ----ATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGC 245334 | || | |||||||| ||| ||||| | |||||| || | || | Sbjct 8235267 GTTAAGTCCAATGCCGCCGGCCGACTTCGAGATCATGGCGCACTGCTCCACGGACTTAAA 8235326 Query 245335 TATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGG 245391 |||||||| ||| ||| | ||||| | | || || || || |||||||| || Sbjct 8235327 AATGCCCTCGATGGAGTCGGCTGTCATGGTCAAGAGGAAACAAGACGACAGCTGCGG 8235383 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944274005182480