Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq4493 127 2e-24 seq2615 104 2e-17 seq1297 104 2e-17 seq1207 104 2e-17 seq4111 89.7 4e-13 seq5402 84.2 2e-11 >seq4493 Length=3184771 Score = 127 bits (140), Expect = 2e-24 Identities = 201/288 (70%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 37842 TGGAACGCGGCTCAAATTCAGCTTGTGCGCGAGGGTAAGATGCATCAGTATATGCGCATG 37901 |||||| |||| || | ||||| ||||||||||| |||||||| | | |||||||| Sbjct 604558 TGGAACTCGGCGCAGCTGCAGCTGGTGCGCGAGGGCAAGATGCACGGCTTTCTGCGCATG 604499 Query 37902 TATTGGTGCAAGAAAATTTTGGAATGGTCTGATGATGCTCAGACCGCGCTCAACTACGCC 37961 || ||| |||||| ||| | || ||| | | || || ||||| | || || Sbjct 604498 TACTGGGCCAAGAAGATTCTCGAGTGGACCGCCACCCCTGAGGAGGCGCTGGAATATGCG 604439 Query 37962 ATTTATCTCAATGATAAGTACAGCTTGGACGGGCGTGATCCCAACGGTTACGTCGGCTGT 38021 || || || || ||||||||| | ||||| || ||||||||||| || |||||||| Sbjct 604438 ATCCTGCTAAACGACAAGTACAGCCTCGACGGACGCGATCCCAACGGCTATGTCGGCTGC 604379 Query 38022 TTGTGGTCTATATGCGGGCTACACGATAGAGCCTGGCGCGAGATTCCCATTTACGGCAAG 38081 ||||||| || | || | ||||| | | |||| ||| |||| | ||||||| Sbjct 604378 ATGTGGTCCATTGGGGGAGTCCACGACATGGGCTGGAAGGAGCGGGCCATCTTCGGCAAG 604319 Query 38082 ATTCGGTACATGAACTACAACGGATGTGTTAGGAAGTTTAATGTTAAC 38129 | || || ||||||||| | || || | ||||| |||||||| Sbjct 604318 GTGCGATATATGAACTACCAGGGGTGCAAGCGAAAGTTCGATGTTAAC 604271 >seq2615 Length=1397 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 389 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 330 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 329 ATAACTGATATAATGAGCCTTTTGCGGTTTC 299 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 389 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 330 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 329 ATAACTGATATAATGAGCCTTTTGCGGTTTC 299 >seq1297 Length=1255 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 247 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 188 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 187 ATAACTGATATAATGAGCCTTTTGCGGTTTC 157 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 247 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 188 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 187 ATAACTGATATAATGAGCCTTTTGCGGTTTC 157 >seq1207 Length=1481 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 396 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 337 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 336 ATAACTGATATAATGAGCCTTTTGCGGTTTC 306 Score = 104 bits (114), Expect = 2e-17 Identities = 79/91 (87%), Gaps = 2/91 (2%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||||||||||| |||||||||||||||| | ||||||||||||| Sbjct 396 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGTAACTGTTAACGATCTAAGGAACC 337 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 336 ATAACTGATATAATGAGCCTTTTGCGGTTTC 306 >seq4111 Length=1924 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 114391 |||||||| |||||||| |||||| |||||||||||||||| | ||||| ||||||| Sbjct 754 CATGTATTAGCTCTAGATTTACCAAAGTTATCCAAGTAACTGTTAACGATCTGAGGAACC 813 Query 114392 AAAACTGATATATTGAGCCATTCGTGGTATC 114422 | |||||||||| |||||| || | ||| || Sbjct 814 ATAACTGATATAATGAGCCTTTTGCGGTTTC 844 Score = 89.7 bits (98), Expect = 4e-13 Identities = 76/91 (84%), Gaps = 2/91 (2%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAAGATCTAAGGAACC 115588 |||||||| |||||||| |||||| |||||||||||||||| | ||||| ||||||| Sbjct 754 CATGTATTAGCTCTAGATTTACCAAAGTTATCCAAGTAACTGTTAACGATCTGAGGAACC 813 Query 115589 AAAACTGATATATTGAGCCATTCGTGGTATC 115619 | |||||||||| |||||| || | ||| || Sbjct 814 ATAACTGATATAATGAGCCTTTTGCGGTTTC 844 >seq5402 Length=10656099 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| || | ||| || || |||| ||||| || ||||||||| |||||||| || | Sbjct 571638 ACCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 571697 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 || || |||| |||| |||||||||||| || ||||| ||||||||||| || Sbjct 571698 CAGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 571757 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 571758 GATGCCCTCCTTGTCC 571773 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397035673109446