Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq5396 140 8e-28 seq5395 140 8e-28 seq5402 125 2e-23 seq5238 105 2e-17 seq5267 93.3 1e-13 >seq5396 Length=9561034 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Minus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || || || |||||||| | ||| ||||| || ||||| | || || || |||||| Sbjct 8331041 TCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAG 8330982 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| ||| ||||| ||||||||||| ||||| || || ||||| || Sbjct 8330981 ATCAGACGCTGCTGA---TCTGGAGGAATTCCTTCTTTGTCCTGAATCTTGGCTTTGACA 8330925 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 ||||| |||| ||| | ||| || || |||||||| ||||| || || || ||||| Sbjct 8330924 TTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTA 8330865 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 8330864 ACGAAGATCTGCAT 8330851 >seq5395 Length=2659632 Score = 140 bits (154), Expect = 8e-28 Identities = 148/194 (76%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || ||||||| || ||||||||||| || | || ||||| |||||| Sbjct 975567 TCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAG 975626 Query 288343 ATCAGACGCTGTTGAGAATCT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||| |||||||| || || |||||||| || || |||||| Sbjct 975627 ATCAGACGCTGCTG---GTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACG 975683 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | |||| | || || || || ||||| ||||| || ||||| ||||| Sbjct 975684 TTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTC 975743 Query 288460 ACGAATATCTGCAT 288473 ||||| |||||||| Sbjct 975744 ACGAAGATCTGCAT 975757 Score = 120 bits (132), Expect = 7e-22 Identities = 169/235 (72%), Gaps = 7/235 (3%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| ||||| ||||| | || || | || | ||| || || ||||| || || | Sbjct 975755 CATG-CCACCACGGAGGCGGAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAAT 975813 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| || ||||||||||| || | || ||||| ||||||||||||||||| || | Sbjct 975814 CGGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTG---GT 975870 Query 288362 CT---GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCG 288418 || |||||||| || || |||||||| || || || || || || || | ||| | Sbjct 975871 CTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGG 975930 Query 288419 ATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || || || ||||| ||||| || ||||| ||||| ||||| || ||||| Sbjct 975931 GCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCACGAAAATTTGCAT 975985 >seq5402 Length=10656099 Score = 125 bits (138), Expect = 2e-23 Identities = 145/194 (75%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 288283 TCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAG 288342 || || ||||| || || || | || ||||||||||| || | || || || |||||| Sbjct 571447 TCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAG 571506 Query 288343 ATCAGACGCTGTTGAGAATCTGGG---ATTCCTTCTTTATCCTGGATTTTCGCTTTCACG 288399 ||||||||||| || ||||||| ||||| || || |||||||| || || |||||| Sbjct 571507 ATCAGACGCTGCTG---ATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTCACG 571563 Query 288400 TTTTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTG 288459 || || || | || | || || || || ||||| ||||| ||||||| ||||||| Sbjct 571564 TTCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTG 571623 Query 288460 ACGAATATCTGCAT 288473 || || |||||||| Sbjct 571624 ACAAAGATCTGCAT 571637 Score = 116 bits (128), Expect = 9e-21 Identities = 173/243 (71%), Gaps = 8/243 (3%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || | |||| || || || ||||| || ||||||| Sbjct 571639 CCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 571698 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || || |||||||| || | ||| || || ||||||||||||||||| || |||| Sbjct 571699 AGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 571755 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || || ||||| || || || | ||| | || Sbjct 571756 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCC 571815 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATG--TTAT 288481 || || | || || ||||| || |||| ||||| || || ||||||||| || |||| Sbjct 571816 ACCTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATTTTGGATTAT 571875 Query 288482 TCT 288484 ||| Sbjct 571876 TCT 571878 >seq5238 Length=3592495 Score = 105 bits (116), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 |||||||| || | || || || || | || || || ||||| || ||||||| Sbjct 2679460 CCACCGCGTAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 2679401 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCT--- 288363 || ||||| ||||| || | || || || ||||||||||||||||| || |||| Sbjct 2679400 AGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTG---ATCTGGG 2679344 Query 288364 GGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCT 288423 ||||| || || || |||||||| || || ||||| || || || | || | || Sbjct 2679343 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCC 2679284 Query 288424 ACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 || || | ||||| ||||| ||||| || || || ||||| || ||||| Sbjct 2679283 ACCTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234 >seq5267 Length=4296760 Score = 93.3 bits (102), Expect = 1e-13 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 269152 ATCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTC 269211 ||||| |||||| ||| |||||| || || |||||||||||||| |||||| | | Sbjct 668630 ATCGGCATGAATTGCGACCTCATGTCGCAGTACATCGAATTCGTGGCGGATCGTCTGCTG 668571 Query 269212 ACGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTA 269271 || || || || || | |||||| | ||||| |||||| ||| ||||| | Sbjct 668570 GTGGAGCTGGGCGTTGGCAAGATCTACAATACCAAGAACCCCTTCAACTTCATGGAGATG 668511 Query 269272 ATTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAG 269307 || ||||| || || ||||| ||||||||||| ||| Sbjct 668510 ATCTCGCTGGACGGCAAGACCAACTTCTTCGAGAAG 668475 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179570923599594