Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq5396 118 1e-21 seq5402 113 5e-20 seq5395 109 5e-19 seq5238 109 5e-19 seq5170 109 5e-19 >seq5396 Length=9561034 Score = 118 bits (130), Expect = 1e-21 Identities = 385/587 (66%), Gaps = 16/587 (3%) Strand=Plus/Plus Query 153806 GTTAAACGACTGGCTCTGATCGATGAAAGCGCCGCGATCGGCCGCCATGTCAATCAA-GT 153864 ||| |||||||| |||||||| ||||| || || ||||| || ||||| | ||| | Sbjct 8233893 GTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGGCCATCTTAATGGTCGA 8233952 Query 153865 TTTTACTGCTCATTTCCCACACAGTTTTGTAGACGGCTTTAATGTCGTCGGGTATGCGAT 153924 || |||| ||||||||||| |||||||| | | | | | ||| ||| | Sbjct 8233953 CTTCACTGAG-ATTTCCCACACTGTTTTGTACAGATCGCGGACCTTCTGGGGGATGGCCT 8234011 Query 153925 CAATTTTCTGCACACTGCCTCCGGCCGCTATAATGGAATTGCGCATGTGGTCGTCGTACA 153984 |||| ||||| | ||| | | | || || || ||||| |||||| ||| Sbjct 8234012 CAATATTCTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCATGTCGTCGTCCCACA 8234071 Query 153985 AATTTAGTCGACATAAATCTTCAACCAAGTGCTGGTTAATTACTTGAAAATCGCCGGCCA 154044 | | || || || | ||| || ||||||| ||||| || ||||| | || Sbjct 8234072 AGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTTGGAATTCGCCAGACA 8234131 Query 154045 ATACGCGGCGCACATACAAATTGCTGGTGAACGGCTCGAACGATTCGTTGTTGCCTAATA 154104 || || | ||| | ||| | ||| |||||||||| |||||||||||||| | | Sbjct 8234132 GAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAGATTCGTTGTTGCCCATAA 8234191 Query 154105 TTTGAGCTGTAGTTGCTGTGGGCATATACGCCACCAACAAAGAGTTTCGCAAACCGTGTT 154164 |||| || || | || ||||||||| ||| ||||||| ||||| || | |||||| | Sbjct 8234192 TTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGTTCCGGACACCGTGCT 8234251 Query 154165 --TTGCAATGCGCAATTTTA-AATCTGCCCAATTCCACAAGTTGGTAGGTTGCAC---GT 154218 ||| ||| | || | |||| ||| | ||| | ||| || | |||| || Sbjct 8234252 GCTTG--ATGGACTCCTTCAGTTTCTG-CCAGTCCCAAAGGTTTGTCG---GCACTTTGT 8234305 Query 154219 TCCACATGTCGTATTGCAAAACACCCAAACTCGCCGGACTGTCACT-ATAACTAGAGTAC 154277 |||||||||||| |||| || || ||| | ||||| || || ||| | || Sbjct 8234306 CCCACATGTCGTACTGCAGAATGCCTTTGCTCACGGGACT-TCCCTCATAGGTTTCATAT 8234364 Query 154278 GGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCTTCTAACGCCGCATAGTATACGGTTTCG 154337 || |||| | | |||| || ||||||||||| | || | ||||| | ||||||| Sbjct 8234365 GGGCCGTCGATCTGGGCCAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCG 8234424 Query 154338 GCAATTTGTTTGTTTAACATTTTGGCTTTGTCACTTTCGTACGGCAA 154384 || || | || || | ||||| |||||||| || || || Sbjct 8234425 AATATCTGCTGATTCAAGAGACCGGCTTCTTCACTTTCATAGGGGAA 8234471 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || |||| | ||||| | || | || || || || |||||||| || || | Sbjct 8331078 ACCACCACGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGA 8331019 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 || |||||| | ||||| ||||||||||| || | || || |||||||| || ||||| Sbjct 8331018 GAGGGTGCGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGG 8330959 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTT-ACAACCTCCACTGTATCACCGGCGTCCA 64394 |||||||||||| || || | | || ||||| ||| || | ||||| | || | Sbjct 8330958 AATTCCTTCTTTGTCCTG-AATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGA 8330900 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | || | ||||||||| || | || || ||||| || ||||| || Sbjct 8330899 CCTCAAGCGTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 8330848 >seq5402 Length=10656099 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 ||||| || || || ||||||||||| | | ||||| |||| || |||||||||||| Sbjct 571441 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCGAGCTGCTTGCCG 571500 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || |||||||| || || |||||||| || || || || || || ||| Sbjct 571501 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTC 571560 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || ||| | ||||| || | || | |||||||||||||||||| Sbjct 571561 ACGTTCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTC 571620 Query 64427 TTTACGAAAATTTGCAT 64443 || || || || ||||| Sbjct 571621 TTGACAAAGATCTGCAT 571637 Score = 96.9 bits (106), Expect = 3e-15 Identities = 160/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | || || | |||| ||||| || || || |||||||| || | Sbjct 571638 ACCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 571697 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || |||| || || ||||||||||| | || || |||||||| || || || Sbjct 571698 CAGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 571757 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| ||| | || || || ||||| Sbjct 571758 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCAC 571817 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | || | |||||| || ||||| || || || || || |||||||| Sbjct 571818 CTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATTTT 571868 >seq5395 Length=2659632 Score = 109 bits (120), Expect = 5e-19 Identities = 144/200 (72%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || ||||||||||| | | |||||| |||| || |||||||| ||| Sbjct 975789 GTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCG 975848 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || ||||| || || || || || || ||| Sbjct 975849 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTA 975908 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 ||| ||| | || || || || || || | || | ||||||||| |||| || Sbjct 975909 ACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 975968 Query 64427 TTTACGAAAATTTGCATTTT 64446 || |||||||||||||| || Sbjct 975969 TTCACGAAAATTTGCATGTT 975988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || || || || || |||||||| || | | |||||| |||| || |||||||| ||| Sbjct 975561 GTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCG 975620 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || || ||||||||||| || || ||||| || || || || || || ||| Sbjct 975621 GCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTC 975680 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | ||||| || || || || | || | ||||||||| |||| || Sbjct 975681 ACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTC 975740 Query 64427 TTTACGAAAATTTGCAT 64443 || ||||| || ||||| Sbjct 975741 TTCACGAAGATCTGCAT 975757 >seq5238 Length=3592495 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | ||||| || || | ||||| || || || |||||||| || | Sbjct 2679461 ACCACCGCGTAGGCGGAGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGA 2679402 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | |||||| |||| || |||||||||||||| | || || |||||||| || || || Sbjct 2679401 CAGGGTGCGGCCGTCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGG 2679342 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 || || || || || || || || ||| ||| ||| | || || | ||||| Sbjct 2679341 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCAC 2679282 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 || | || | |||||||||||| | ||||| ||||| |||||||| Sbjct 2679281 CTCCAAGGTGATGGTCTTGCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234 >seq5170 Length=6624210 Score = 109 bits (120), Expect = 5e-19 Identities = 229/337 (68%), Gaps = 11/337 (3%) Strand=Plus/Plus Query 115361 GGACTGCACGGTTTTCATGTTCACGAATTCGGCGACACTAGCAACGGCTGCACGTCCGCC 115420 || |||||||| || || || ||||| ||||| |||| | ||||||||||| ||| || Sbjct 512307 GGCCTGCACGGATTCCACGTACACGAGTTCGGGGACAACACCAACGGCTGCATGTCGTCC 512366 Query 115421 GGCGAGCATTTCAACCCGTTTAACCAAGATCACGGCGCACCGAACGCACCCG-TCCGCCA 115479 || ||| ||||| || | | | || ||||| || || || || | ||| || Sbjct 512367 GGACCGCACTTCAATCCCTACGGCAAGGAGCACGGAGCTCCCGCCG-ACGAGAACCGTCA 512425 Query 115480 CGTCGGTGATCTGGGCAACGTCGAATCTGCGGGCTTCAACTCGCTCACCGACGTCAACAT 115539 | | || || ||||||||| |||| | | || | ||| | |||| | |||||||| Sbjct 512426 CCTGGGAGACCTGGGCAACATCGAGGCCACCGG---CGACTGTCCCACCAAGGTCAACAT 512482 Query 115540 GACGAGCGACT---TAATGACGTTGTACGGCCCGAACAGTGTGCTCGGCCGCAGCTTAGT 115596 || ||||| || ||| ||| |||| | |||| | |||| |||| | | || Sbjct 512483 CAC---CGACTCGAAGATCACGCTGTTCGGCGCCGACAGCATCATCGGGCGCACCGTTGT 512539 Query 115597 GGTGCACGCGGACCGCGACGATCTCGGCCTTACCGATCATCCGCTAAGCAAAACCACGGG 115656 ||| ||||| || ||| |||||||||| | || ||| ||||| ||||||| Sbjct 512540 GGTCCACGCCGATGCCGATGATCTCGGCCAGGGTGGCCACGAGCTGAGCAAGTCCACGGG 512599 Query 115657 TAACTCGGGCGGGCGCCTGGCCTGCGGCATCATCGGC 115693 ||| | || | ||| | | ||||||| |||||||| Sbjct 512600 AAACGCAGGTGCCCGCATTGGCTGCGGCGTCATCGGC 512636 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499610305772120