Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq5396 251 7e-62 >seq5396 Length=9561034 Score = 251 bits (278), Expect = 7e-62 Identities = 881/1365 (65%), Gaps = 39/1365 (3%) Strand=Plus/Minus Query 93928 CCACAGATGTCTTCGTGTTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTC 93987 || ||| |||| || |||||||| |||| | | |||||||||||| || ||||| Sbjct 8235383 CCGCAGCTGTCGTCTTGTTTCCTCTTGACCATGACAGCCGACTCCATCGAGGGCATTTTT 8235324 Query 93988 GACAGCCTCAAGGACTGTGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTC 94047 | | | || | || || | ||||| || | || || || || || | | ||| Sbjct 8235323 AAGTCCGTGGAGCAGTGCGCCATGATCTCGAAGTCGGCCGGCGGCATTGGACTTAACGTC 8235264 Query 94048 CACGACGTACGTGCCAGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTC 94107 || | | || || | ||| ||| || |||| || || ||||| ||||| ||||| Sbjct 8235263 CATTGCATCCGAGCAAAGGGCACCTCGATTTGCGGCACGAACGGCACTTCCAATGGCCTG 8235204 Query 94108 GTCCCTATGCTCCGGGTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGG 94167 || || ||| | ||||||||||||| | ||||||||| || || ||||| || || | | Sbjct 8235203 GTTCCCATGTTGAGGGTCTTCAACAATGTGGCGCGCTATGTCGATCAGGGAGGCGGCAAG 8235144 Query 94168 AGGAAGGGTTCTTTCGCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATC 94227 | ||| | || || | || || |||||||||||| ||||||| | ||| | Sbjct 8235143 CGTCCCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTG 8235084 Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGA---GGGCCAGAGACCTCTTCTACGCT 94284 || || |||||| |||||| || ||||| | ||| | || || |||||||| Sbjct 8235083 GAACTTAAGAAGAACACCGGCAAGGA---GGAGAATCGCGCCCGCGATCTGTTCTACGCC 8235027 Query 94285 CTCTGGGTGCCAGACCTTTTTATGAAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTT 94344 || ||| | || || || |||||||| ||||||||| || | ||| || | Sbjct 8235026 CTGTGGATACCCGATCTCTTTATGAAGCGCGTCGAGGCCAATGGAGATTGGTCACTAATG 8234967 Query 94345 TGTCCCAATGAATGTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTAT 94404 ||||| || |||| || || || ||| || || || || ||| | |||||| Sbjct 8234966 TGTCCGCATAAATGCCCTGGCCTTCACGATGTGTGGGGCGATGAATTCGAAAAGTTGTAT 8234907 Query 94405 GCTCGTTACGAATCGCAGGGCAAGGCCA---GGAAGGTTATGGATGCTAGGAAGC--TGT 94459 | || || |||| |||| | | ||||| || | || | ||| Sbjct 8234906 GAGAAGTATGAGCAAGAGGGTCGTGCCAACCGAACGGTTAAGGCT-----CAATCCTTGT 8234852 Query 94460 GGGATCAGATCGTGGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACT 94519 || || | || | |||||| || || || | |||||||| |||| ||||| Sbjct 8234851 GGTTCGCCATTATTGAGGCACAGGTCGAAACTGGAAACCCCTACATGCTGTTTAAGGATG 8234792 Query 94520 CTGTCAACGCCAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCA 94579 | |||| ||| |||||||||| | |||| |||||| || || |||||| Sbjct 8234791 CCTGCAACAGGAAGAGCAACCAGCAGAATGTCGGCACCATCAAGTGCAGCAACTTGTGCA 8234732 Query 94580 CCGAGATTGTCGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCA 94639 | || || || ||||| | ||||||||||||||||| || || ||| ||| |||||| Sbjct 8234731 CAGAAATCGTGGAGTACTCCTCTCCGGACGAGATTGCAGTCTGCAACTTGGCATCCATCG 8234672 Query 94640 ACCTGTCCACTTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGC 94699 ||| || ||||| | || | | | | | |||| | || | | Sbjct 8234671 CCCTCAACATGTTCGT---CACTCCCGAGAAG---------ACATACGATTTCAAGAAAC 8234624 Query 94700 TT-GTGAACTTCGCGGGAAGGATGGTCTTGAACCTGAACAGGGTAATCGACAAGAACTTC 94758 || ||| || | || || | | ||| || |||| | | ||||| | |||||| Sbjct 8234623 TTAAGGAAGTTACCAAGACGG-TTACCAAGAATCTTAACAAGATCATCGATATAAACTTC 8234565 Query 94759 TACCCCGTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTC 94818 |||||| | || ||||| |||| || ||| ||| |||||| ||| | |||||||| ||| Sbjct 8234564 TACCCCCTGCCAGAGGCAAAGAAATCCAACTTGAGGCATCGTCCCGTGGGCATCGGTGTC 8234505 Query 94819 CAGGGTTTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCG 94878 ||||| ||||| ||||| || | | |||||| | ||||| || || || || | Sbjct 8234504 CAGGGATTCGCTGACGCCCTAATTCTTATGCGTTTCCCCTATGAAAGTGAAGAAGCCGGT 8234445 Query 94879 GGTTTGAATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCA 94937 |||||| | | |||||||||| ||| || ||||| ||| | ||| | | || | Sbjct 8234444 CTCTTGAATCAGCAGATATTCGAAACCATCTACTACGGCGCCCTGGAAGCCAGTTGTGAA 8234385 Query 94938 CTTGGCCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGG 94997 || | ||||||| |||||| ||| | ||| | | ||| ||| || | || Sbjct 8234384 CTGGCCCAGATC-GACGGC---CCATATGAAACCTATGAGGGAAGTCCCGTGAGCAAAGG 8234329 Query 94998 CATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGG--GAAGCT 95055 |||| | |||| |||| | |||| ||| | || | |||||| ||| || Sbjct 8234328 CATTCTGCAGTACGACATGTGGGACAAAGTGCCGACAAACCTTTGGGACTGGCAGAAACT 8234269 Query 95056 CTACGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCC 95115 | | | | | | | |||||||| ||| | ||| | || || || |||||| Sbjct 8234268 GAAGGAGTCCA--TCAAGCAGCACGGTGTCCGGAACTCCCTGTTGGTTGCGCCTATGCCC 8234211 Query 95116 ACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAAC 95175 || || ||||| || || || | ||||||||||| || ||||| || | ||| | || Sbjct 8234210 ACTGCGTCCACTGCCCAAATTATGGGCAACAACGAATCTTTCGAGCCGTACACAACGAAT 8234151 Query 95176 GTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGG 95235 | || | |||||| || || | || ||||||| || | ||| | || | || || Sbjct 8234150 ATTTATACCAGGCGAGTTCTGTCTGGCGAATTCCAAGTGGTTAACCATCATTTGTTAAGG 8234091 Query 95236 GACCTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAA 95280 ||||| ||| |||| |||||| ||| | | ||||||||| Sbjct 8234090 GACCTAACGGAGCTGGACTTGTGGGACGACGACATGAAGAACCAA 8234046 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494689045547080