Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq5091 100 2e-16 seq2115 100 2e-16 seq5132 91.5 1e-13 >seq5091 Length=3955622 Score = 100 bits (110), Expect = 2e-16 Identities = 130/177 (73%), Gaps = 2/177 (1%) Strand=Plus/Plus Query 108448 CAGAACACCATCCCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACG 108507 ||||||||| | | ||||||| || ||| | || |||||||| || ||||| || Sbjct 1368082 CAGAACACCCTGTACGACTGGGTGCGGGACCACCGAGTCCACCACAAATATTCTGAGACC 1368141 Query 108508 ACGGCCGACCCACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATG 108567 || || || |||||||||||| |||| |||| ||||| |||||||| ||||| ||| Sbjct 1368142 GATGCAGATCCCCACAACGCCAACCGGGGATTCTTTTTCTCCCACGTGGGCTGGCTGATG 1368201 Query 108568 ATGACCAAGGACCCCGACGTGATCTCGGC-CGGTCGAAAAATGGACATGACGGACAT 108623 ||| ||| |||| || ||| | || | |||||| | || ||||||| ||||| Sbjct 1368202 ATGCTGAAGCACCCGGAGGTGCT-GCGTCGCGGTCGCCAGATCGACATGAGCGACAT 1368257 Score = 89.7 bits (98), Expect = 4e-13 Identities = 66/77 (86%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | ||||||||||||||||||||||||||||| ||||||| ||||||||||| | Sbjct 1368897 TGGCCATGGGCGAGGGATGGCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAG 1368956 Query 108941 CCGAGTTGGGGAACGAC 108957 | ||| |||| ||| || Sbjct 1368957 CGGAGCTGGGCAACTAC 1368973 Score = 84.2 bits (92), Expect = 2e-11 Identities = 84/109 (77%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 108465 GTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAA 108524 ||||| || ||||||||| | |||||||||| ||| || || ||||| || ||||| Sbjct 1356885 GTGGGCCCTGGATCACAGGATACACCACAAGTTCTCGGAGACCGATGCCGATCCGCACAA 1356944 Query 108525 CGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACC 108573 |||||| |||| |||| ||| | |||||||| |||||| | ||||| Sbjct 1356945 CGCCAAGCGGGGCTTCTTCTTCGCCCACGTGGGCTGGCTCTTCCTGACC 1356993 >seq2115 Length=2123598 Score = 100 bits (110), Expect = 2e-16 Identities = 163/235 (69%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 108355 ACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCCACCGCCCCGTTCAGG 108414 |||||||| || ||||| ||||| | ||||| ||||||||||||| ||| | | Sbjct 840753 ACGGCCGGTGTGCATCGCCTGTGGTCGCACAAGGCCTACAAGGCCAAGCTGCCGCTGCGC 840694 Query 108415 GTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATCCCGCAGTGGGTGCTC 108474 | ||||| ||| ||| ||| |||| ||||||| |||| | ||||| | | Sbjct 840693 ATCTTCCTCATGCTGTGCCAGTCGCTGGCCTTCCAGAACAGCATCTGGGAGTGGACCCGC 840634 Query 108475 GATCACAGGGTTCACCACAAGTACTCTGACACGACGGCCGACCCACACAACGCCAACAGG 108534 || ||| | || |||||||||| | | ||||| ||||| || |||||| | | | Sbjct 840633 GACCACCGTGTGCACCACAAGTTCACCGACACACACGCCGATCCCCACAACTCGCGCCGC 840574 Query 108535 GGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGACCCCGACGTGA 108589 || |||| ||| | ||| |||| ||||| ||| | ||| ||||||| |||| Sbjct 840573 GGCTTCTTCTTCGCCCACATGGGCTGGCTGATGTGCAAGAAGCACCCCGATGTGA 840519 Score = 95.1 bits (104), Expect = 9e-15 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 108781 CTCAACTTTACGTGGCTGGTCAATTCGGCGGCGCACATGTACGGCGACCGTCCGTTCGAC 108840 ||| |||| || |||||||| || ||||| ||| | |||||| || | ||| Sbjct 840017 CTCCACTTCACCTGGCTGGTGAACAGCGCGGCCCACTTCTACGGCATGAAGCCCTACGAT 839958 Query 108841 AAGAACATTT-TCCCAAGAGAAAACAAATTGGTGGCGGCGTTGGCTCTCGGCGAGGGATG 108899 |||| | | ||| || | ||||| ||||| | | || | ||||||||||||| Sbjct 839957 GTGAACGTGAGTGCCATGA-ACAACAAGCTGGTGTCCACCCTGACCATCGGCGAGGGATG 839899 Query 108900 GCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCGCCGAGTTGGG 108950 |||||||||||||||||| ||||||| ||||||||||| || ||| |||| Sbjct 839898 GCACAACTACCACCACGTCTTCCCCTGGGACTACAAGGCAGCTGAGCTGGG 839848 >seq5132 Length=3397788 Score = 91.5 bits (100), Expect = 1e-13 Identities = 104/139 (75%), Gaps = 3/139 (2%) Strand=Plus/Minus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| |||||||||||||||| |||||||||||||| ||||||| ||||||||| | | Sbjct 27493 TGGCCTTCGGCGAGGGATGGCATAACTACCACCACGTCTTCCCCTGGGACTACAAGACGG 27434 Query 108941 CCGAGTTGGGGAACGACT---TTAATTTCACCGCTAGGATATTGGACTTTGCCGCGTCGA 108997 ||||||| || || ||| | || |||||| | | | | ||||| ||| || Sbjct 27433 CCGAGTTCGGCAAATACTCGCTAAACTTCACCACCGGCTTCATCGACTTCTTCGCCAAGA 27374 Query 108998 GAGGATGGGTCTACGACCT 109016 || |||| ||||||||| Sbjct 27373 TCGGCTGGGCCTACGACCT 27355 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381747102276312