Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq5402 87.8 1e-12
seq5396 82.4 5e-11
>seq5402
Length=10656099
Score = 87.8 bits (96), Expect = 1e-12
Identities = 159/233 (68%), Gaps = 0/233 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
||||| |||| | | || || |||||||| || || || || |||||||| |||
Sbjct 571639 CCACCGCGCAGACGGAGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 571698
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
|| | | |||| || | ||| ||||| ||| | |||| |||||| || || ||
Sbjct 571699 AGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGG 571758
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
|| || |||||||| || ||| || ||| | || || || ||| || ||
Sbjct 571759 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACC 571818
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGA 15182
|| ||||||||||| ||||| |||| || || ||||| || ||||| || ||
Sbjct 571819 TCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCACAAAGATCTGCATTTTGGA 571871
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 14950 CCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTG 15009
|||||||||| | | ||| ||||| | ||| || || || || |||||||||||
Sbjct 571411 CCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAA 571470
Query 15010 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGA 15069
||| | | |||| || | || ||||| ||| | |||| |||||| || || |||
Sbjct 571471 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 571530
Query 15070 ATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACG 15129
||||| |||||||| || ||| || || | || || || || || ||
Sbjct 571531 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACC 571590
Query 15130 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15177
|| | ||| ||||| || || |||| ||| || ||||| || ||||||
Sbjct 571591 TCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCATA 571638
>seq5396
Length=9561034
Score = 82.4 bits (90), Expect = 5e-11
Identities = 113/158 (72%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 15022 TCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTG 15081
||||| | || ||||||||| | |||| |||||| || || ||||||||||| |||
Sbjct 8331005 TCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTTG 8330946
Query 15082 TCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATG 15141
|| ||| ||| ||| ||| |||| |||||||| | ||| || || | || |||
Sbjct 8330945 TCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGATG 8330886
Query 15142 GTTTTACCTGTCAGAGTTTTTACAAAAATTTGCATATT 15179
|| || || || || || || || || || ||||| ||
Sbjct 8330885 GTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTT 8330848
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357367943386055
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |