Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq5396 205 8e-48 >seq5396 Length=9561034 Score = 205 bits (226), Expect = 8e-48 Identities = 929/1458 (64%), Gaps = 40/1458 (3%) Strand=Plus/Minus Query 123235 CCATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGG---CGGCAAACGCA 123291 ||||| || | || | ||| || | | ||| | ||||| ||||| |||||| || Sbjct 8235199 CCATGTTGAGGGTCTTCAACAATGTGGCGCGCTATGTCGATCAGGGAGGCGGCAAGCGTC 8235140 Query 123292 AAGGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTA-AAT 123350 || || | || || || || || || |||||| || || | || || | || Sbjct 8235139 CCGGTGCCTTTGCCATTTACCTGGAGCCCTGGCACTCGGACGTCTTTGAGTTCCTGGAAC 8235080 Query 123351 TTAAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGG 123410 |||| | | |||| || ||| || || ||||||||| |||| ||||| | ||| Sbjct 8235079 TTAAGAAG-AACACCGGCAAGGAGGAGAATCGCGCCCGCGATCTGTTCTACGCCCTGTGG 8235021 Query 123411 GTACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCC 123470 |||||||| | |||||| ||||| | | | | || | ||||| || |||||||| Sbjct 8235020 ATACCCGATCTCTTTATGAAGCGCGTCGAGGCCAATGGAGATTGGTCACTAATGTGTCCG 8234961 Query 123471 GATCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAA 123530 || || || ||| | ||| || | ||| || | || || ||||||| | | | Sbjct 8234960 CATAAATGCCCTGGCCTTCACGATGTGTGGGGCGATGAATTCGAAAAGTTGTATGAGAAG 8234901 Query 123531 TACGAGCGCGAAGG------CAAACA---GGTTAGTCAGGTTCCGGCACGTGATTTGTTC 123581 || |||| || || ||| | ||||| ||| || | | || | |||| Sbjct 8234900 TATGAGCAAGAGGGTCGTGCCAACCGAACGGTTA---AGGCTCAATC-CTTG--TGGTTC 8234847 Query 123582 AAATTTATTATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCC 123641 ||||| || |||| |||||||| |||| || |||||||| | || || ||| Sbjct 8234846 GCCATTATT---GAGGCACAGGTCGAAACTGGAAACCCCTACATGCTGTTTAAGGATGCC 8234790 Query 123642 TGCAACAGGAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCC 123701 ||||||||||| | ||| ||| || | || || || || || || || | ||| | Sbjct 8234789 TGCAACAGGAAGAGCAACCAGCAGAATGTCGGCACCATCAAGTGCAGCAACTTGTGCACA 8234730 Query 123702 GAAATTATCGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATTTGC 123761 ||||| | || ||| | | | || | | || || || || ||||| || || | Sbjct 8234729 GAAATCGTGGAGTACTCCTCTCCGGACGAGATTGCAGTCTGCAACTTGGCATCCATCGCC 8234670 Query 123762 GTGAATCGTTGCGTCGAAAACGGCG----CTTTTAATTTCCAAACGCTCAAACGCATAAC 123817 | || | |||| | | | | | | ||||| | | || || | || Sbjct 8234669 CTCAACATGTTCGTC-ACTCCCGAGAAGACATACGATTTCAAGAAACTTAAGGAAGTTAC 8234611 Query 123818 AAAAACTGTAGTAAAGAATTTGAACAAAATTATCGATGTTAATTTTTATCCTTTGGAGGA 123877 || || || |||||| | ||||| || |||||| | || || || || || || Sbjct 8234610 CAAGACGGTTACCAAGAATCTTAACAAGATCATCGATATAAACTTCTACCCCCTGCCAGA 8234551 Query 123878 AGCGCGTTTGTCTAATTTGAAACACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGA 123937 || || || |||| || | || || || | || | || || || || || Sbjct 8234550 GGCAAAGAAATCCAACTTGAGGCATCGTCCCGTGGGCATCGGTGTCCAGGGATTCGCTGA 8234491 Query 123938 CGCGTTTGTAATGCTGCGCATGCCGTACGAAAGCGACGAAGCAAAGTTGCTT-AATACGC 123996 ||| | | | |||| | || || ||||| || ||||| || ||| ||| || Sbjct 8234490 CGCCCTAATTCTTATGCGTTTCCCCTATGAAAGTGAAGAAGCCG-GTCTCTTGAATCAGC 8234432 Query 123997 AAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTC 124056 | ||| |||||| || || |||||||| |||| || || || ||||| || | || Sbjct 8234431 AGATATTCGAAACCATCTACTACGGCGCCCTGGAAGCCAGTTGTGAACTGGCCCAGATCG 8234372 Query 124057 ACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACA 124116 ||||| | || |||| || | ||| || || | |||| ||| ||| |||||||||||| Sbjct 8234371 ACGGCCCATATGAAACCTATGAGGGAAGTCCCGTGAGCAAAGGCATTCTGCAGTACGACA 8234312 Query 124117 TGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGA 124176 ||||| | |||||||| | ||||||||| | || | ||| | Sbjct 8234311 TGTGGGACAAAGTGCCGACAAACCTTTGGGACTGGCAGAAACTGAAGGAGTCCATCAAGC 8234252 Query 124177 CGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAA 124236 ||||||| | || ||||| |||||||| ||| ||||| || || ||||||| |||| Sbjct 8234251 AGCACGGTGTCCGGAACTCCCTGTTGGTTGCGCCTATGCCCACTGCGTCCACTGCCCAAA 8234192 Query 124237 TTTTAGGAAACAACGAATCCTTCGAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGT 124296 || | || ||||||||||| |||||||||| ||| | ||| | || | ||||| Sbjct 8234191 TTATGGGCAACAACGAATCTTTCGAGCCGTACACAACGAATATTTATACCAGGCGAGTTC 8234132 Query 124297 TAGCCGGCGATTTTCAAGTGATAAATCATCATTTGGTGGACGACTTGGTGGCGTTAAATT 124356 | | ||||| || |||||| | || ||||||||| | ||| | || | | | | Sbjct 8234131 TGTCTGGCGAATTCCAAGTGGTTAACCATCATTTGTTAAGGGACCTAACGGAGCTGGACT 8234072 Query 124357 TGTACGATGAAAACATGCGCAACGAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCG 124416 ||| || || ||||| ||| |||| ||| | | | ||| | ||| || | Sbjct 8234071 TGTGGGACGACGACATGAAGAACCAAATCATTTCCAGCAGGGGCTCAATCCAGAATATTG 8234012 Query 124417 CTTCGATTCCGGAACACGTCAAGCAACTGTACAAAACCGTGTGGGAAAT----GAAAAAT 124472 | || || | | ||| | ||||||||||| ||||||||||| | || | Sbjct 8234011 AGGCCATCCCCCAGAAGGTCCGCGATCTGTACAAAACAGTGTGGGAAATCTCAGTGAAGT 8233952 Query 124473 AAACGATTAATTGAAATGGCCGTCGACCGAGGCGCGTACACGGATCAAAGTCAATCTTTT 124532 || |||| | ||||||| || ||||| |||| || ||||| ||||| || || Sbjct 8233951 CGACCATTA----AGATGGCCGCAGATCGAGGAGCGTTCATAGATCAGAGTCAGTCGTTC 8233896 Query 124533 AACGTGTTTGTAGCGGAACCCACCTACGCCCGCATGACCAGCATACACATGCACGCGTGG 124592 ||| | ||| || || || | ||| | | || ||||||| | | | ||| Sbjct 8233895 AACATTCATGTGGCAGAGCCAAACTATGGAAAACTCACGTCCATACACTTCTATTCCTGG 8233836 Query 124593 AGCAGC-GGACTCAAAACGGGCATGTATTACTTAAGAACCAAACCGGCGGCCGATGCCAT 124651 | ||| || |||||||| || ||||| ||| | | || || || || || | ||||| Sbjct 8233835 A-AAGCTGGTCTCAAAACTGGAATGTACTACCTGCGCACAAAGCCAGCTGCAAACGCCAT 8233777 Query 124652 TCAATTTACCGTCGACAA 124669 ||| || ||||| || || Sbjct 8233776 TCAGTTCACCGTGGATAA 8233759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451971994829080