Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq5267 147 3e-30 seq5396 127 3e-24 seq4488 122 1e-22 >seq5267 Length=4296760 Score = 147 bits (162), Expect = 3e-30 Identities = 287/419 (68%), Gaps = 4/419 (1%) Strand=Plus/Plus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| || || ||| ||||||||||||||| ||||| || || || ||| ||||||| Sbjct 668460 GTACTCGCCCACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCAT 668519 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTGGCACC-CCAATCTGTTTGAGGAGAC 127349 || | || |||||||| | || | || ||| || | || | || || |||| Sbjct 668520 GAAGTTGAAGGGGTTCTTGGTATTGTAGATC-TTGCCAACGCCCAGCTCCACCAGCAGAC 668578 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 |||||| ||| | || ||||||| ||||| || | ||||| ||||||||||| Sbjct 668579 GATCCGCCACGAATTCGATGTACTGCGACATGAGGTCGCAATTCATGCCGATGAGGTTTA 668638 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 || | || || || |||| ||| ||| ||| ||||||| || || | ||| || Sbjct 668639 CGGGCAAGGCATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCGCGGATGATCTCGA 668698 Query 127470 GAATAGTGTCCACCCCAGGTCTATTGCGTAAAGT-CTTGAAGAGTTCCACAGCAAACTCT 127528 || || || |||| | || |||| || ||| | ||| ||||| || Sbjct 668699 TGATGCGCTCGCGCCTGGGTCGCT-GCACCAAGTGCTGGAACATCAGCACGGCAAAGTCG 668757 Query 127529 TGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGA 127588 ||| || |||||||| ||||||||||| || || |||||| ||| || ||||| ||| Sbjct 668758 CAGTGCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGA 668817 Query 127589 CCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCAC 127647 || |||||||||| ||||||||| | || ||| ||||||||| ||||| || Sbjct 668818 CCGCGCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGAC 668876 >seq5396 Length=9561034 Score = 127 bits (140), Expect = 3e-24 Identities = 585/912 (64%), Gaps = 21/912 (2%) Strand=Plus/Plus Query 115902 ATAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGA 115961 ||| || || || ||||| ||||| || | || ||||| |||| |||||||| ||||| Sbjct 8234145 ATAAATATTCGTTGTGTACGGCTCGAAAGATTCGTTGTTGCCCATAATTTGGGCAGTGGA 8234204 Query 115962 GGCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTC 116021 || |||||||| || || | | ||| ||| |||| ||| | | | ||| || Sbjct 8234205 CGCAGTGGGCATAGGCGCAACCAACAGGGAGTTCCGGACACCGTGCTGCTTGATGGACTC 8234264 Query 116022 CTTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCT---CCCACATATCAAACTG 116078 ||| || | |||||| | || |||||| | | | ||||||| || |||| Sbjct 8234265 CTTCAGTTTCTGCCAGTCCCAA---AGGTTTGTCGGCACTTTGTCCCACATGTCGTACTG 8234321 Query 116079 GAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGC 116138 || || |||| | | | || ||||||| | || ||||||||||| || | || || Sbjct 8234322 CAGAATGCCTTTGCTCACGGGACTTCCCTCATAGGTTTCATATGGGCCGTCGATCTGGGC 8234381 Query 116139 CAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCAT 116198 || ||| | || || || ||||| ||| || || || || || || | ||||| Sbjct 8234382 CAGTTCACAACTGGCTTCCAGGGCGCCGTAGTAGATGGTTTCGAATATCTGCTGATTCAA 8234441 Query 116199 TGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAA-AATAAATACATCCGCGAGAC 116257 ||| || || ||| | | || || ||| || ||| | | || |||| | Sbjct 8234442 GAGACCGGCTTCTTCACTTTCATAGGGGAAAC-GCATAAGAATTAGGGCGTCAGCGAATC 8234500 Query 116258 CTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCT-CCACG 116316 | |||||||||| ||| | || ||||| |||| || || |||| ||| || | Sbjct 8234501 CCTGGACACCGATGCCCACGGGACGATGCCTCAAGTTGGA-TTTCTTTGCCTCTGGCAGG 8234559 Query 116317 GGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCA 116376 || || || || ||||||| | | | || ||||| ||||| || ||| || | ||| Sbjct 8234560 GGGTAGAAGTTTATATCGATGATCTTGTTAAGATTCTTGGTAACCGTCTTGGTAACTTCC 8234619 Query 116377 TGAAGCTTTTCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATT 116436 | ||| || | | |||| | || |||| | |||| || | |||||||| Sbjct 8234620 TTAAGTTTCTTGAAATCGTA--TG-TCTTCTCGGGAGTGACGAACATGTTGAGGGCGATG 8234676 Query 116437 GACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACAC 116496 || |||| || || || | |||| ||| | | |||||| | ||||| || ||| Sbjct 8234677 GATGCCAAGTTGCAGACTGCAATCTCGTCCGGAGAGGAGTACTCCACGATTTCTGTGCAC 8234736 Query 116497 AAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCC 116556 || || | ||| |||||||| | |||| || || ||| |||| || |||||| Sbjct 8234737 AAGTTGCTGCACTTGATGGTGCCGACATTCTGCTGGTTGCTCTTCCTGTTGCAGGCATCC 8234796 Query 116557 TTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCATA-- 116614 || | ||||| || || | || || || || | || | ||| || ||| | Sbjct 8234797 TTAAACAGCATGTAGGGGTTTCCAGTTTCGACCTGTGCCTCAATAATGGCGAACCACAAG 8234856 Query 116615 CATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGG 116674 || | || || || |||||| || ||||| | ||| ||||| || | Sbjct 8234857 GATTG--AGCCTTAACCGTTCGGTTGGCACGACCCTCTTGCTCATACTTCTCATACAACT 8234914 Query 116675 CCTCAAACTCTTC-ACCCACAGCCTC-TGAGAGCCCTGGTGCCTTATCTGGACAGAAGAG 116732 || || || || |||||| | || ||| || || || |||| ||||| | || Sbjct 8234915 TTTCGAATTCATCGCCCCACA-CATCGTGA-AGGCCAGGGCATTTATGCGGACACATTAG 8234972 Query 116733 AGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCGA 116792 ||||| | ||| |||| || |||||||| ||||| || || ||||| || || | Sbjct 8234973 TGACCAATCTCCATTGGCCTCGACGCGCTTCATAAAGAGATCGGGTATCCACAGGGCGTA 8235032 Query 116793 GAAGAGATCCCG 116804 ||| ||||| || Sbjct 8235033 GAACAGATCGCG 8235044 >seq4488 Length=490991 Score = 122 bits (134), Expect = 1e-22 Identities = 173/241 (72%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 175927 ATCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACATGGCTCAAGGAGATTGATATT 175986 ||| || || ||| | | || || || || ||||| | |||||| || ||||| ||||| Sbjct 138696 ATCCTTTCCGCCCGTCAAGCGAGTACCGAACTGACCGCGTGGCTCCAGCAGATTAATATT 138637 Query 175987 GTTTGAGCCCATATAGTCATTCGCCAACTTGACAATCGT-ATCCGCGAGGGAGACTTCAC 176045 ||||| ||||| | ||| | |||| || || || || ||| || || || || |||| Sbjct 138636 GTTTGCGCCCACAAAGTTCTGGGCCAGATTAACGATTGTCATCTGC-AGCGAAACCTCAC 138578 Query 176046 CGTGATGGTAGGCCGACTTGTCCGCCACATACGCCGCCAACTGCGCCACCTTCATCTCAT 176105 |||| |||||||||||| | || ||||| | | | | ||| |||||||||| |||| Sbjct 138577 CGTGGTGGTAGGCCGACATCTCGGCCACGGAACCAGATAGCTGGGCCACCTTCACCTCAC 138518 Query 176106 CCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTGAGGCCGT 176165 |||| ||| | | |||||| | |||| ||||| | ||| ||||| ||||||| Sbjct 138517 GCTTGTCGTTTCTCTTGAAGCAGGTGAACATCACCTTGCGCTGACCTGGCTTCAGGCCGT 138458 Query 176166 C 176166 | Sbjct 138457 C 138457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613464844996680