Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq5267 217 2e-51 seq5396 122 1e-22 >seq5267 Length=4296760 Score = 217 bits (240), Expect = 2e-51 Identities = 546/813 (67%), Gaps = 30/813 (4%) Strand=Plus/Plus Query 159643 CACATTCTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAA 159702 ||| ||||||||||| |||||||||||||| |||| || || |||||||| ||| Sbjct 668469 CACCTTCTTCTCGAAGAAGTTGGTCTTGCCGTCCAGCGAGATCATCTCCATGAAGTTGAA 668528 Query 159703 TGGGTTCTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCAC 159762 |||||||| | ||| ||| || || || || |||||| | || ||||| Sbjct 668529 GGGGTTCTTGGTATTGTAGATCTTGCCAACGCCCAGCTCCACCAGCAGACGATCCGCCAC 668588 Query 159763 AAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCG 159821 ||||||||||| || | |||| | || || || || || | || | ||||| | | Sbjct 668589 GAATTCGATGTA-CTGCGACATGAGGTCGCAATTCATGCCGATGAGGTTTACGGGCAAGG 668647 Query 159822 CTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGA-GACACGT 159880 | || | || ||||||| ||| || | || || ||| | |||| ||| || || Sbjct 668648 CATCGGTGAGGAACTCCTGCTCTATGGCCACAGCATCGCGGATGATCT-CGATGATGCGC 668706 Query 159881 TCGTACCCCGGCTTGCC-CAAAATGTGGTCCTTAAACAGGAGGCACG-CAAAGTCGCAGT 159938 ||| || || | || || | ||| || |||| || |||| |||||||||||| Sbjct 668707 TCGCGCCTGGG-TCGCTGCACCAAGTG---CTGGAACATCAG-CACGGCAAAGTCGCAGT 668761 Query 159939 GCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCAC 159998 |||| |||||||| || ||||||| ||||||||| | | | || |||||||| | || | Sbjct 668762 GCAGGCCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGTCCCGGCATCAGACCGC 668821 Query 159999 GCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAAAGATCCCCTCCACGGCCG 160058 || || ||||| ||||||| || || ||||| || ||||| ||||| ||||| | Sbjct 668822 GCTTCTTCAGCCAGAAAATGGAGGCGAAGCTGCCGCTGAAGAAGATGCCCTCGACGGCGG 668881 Query 160059 CAAACGCCACGAGCCTCTCACCAAA---AGAGGCGTTGGTGTCATGGGTCCACCTTTTGG 160115 |||| || | || | ||| || || | || |||| | | |||| || Sbjct 668882 CAAAGGCAATGATGCGCTCCCCGAAGTTGGCCGCCTTGGAG---GAGATCCAGGAAAGGG 668938 Query 160116 CCCATTCAGCCTTCTTTGCGATGCAC----GGCATGCGCTCGACGGCGTTAAACAATCTG 160171 |||| || ||| ||||| | ||| ||||| ||||| |||||| |||| Sbjct 668939 CCCAGTCCGCC----TTGCGCTTCACAGCGGGCATTGTCTCGATGGCGTTGAACAGGTAT 668994 Query 160172 TCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCGTGC 160231 || ||| | | |||| ||| || | |||||| |||||| || | |||| Sbjct 668995 TCGCGCTGGTGCGGATCCCGGATGTAGGTGTCGATCAGCACACTGTACATCTCCGAGTGC 669054 Query 160232 ACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGCCTCC-AGATACTGCACCTC 160290 || || || ||||| ||||| ||| ||||| | |||||| ||| ||||||||| Sbjct 669055 ACGTTCTCCATGGCGATCTGGAAGCCATAGAAGCAGCGAGCCTCCGTGAT-CTGCACCTC 669113 Query 160291 CTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTCGGCGGCCGCAAAGAAAGC 160350 ||| |||| | | |||| || | ||||| | || |||| ||| || ||||| || Sbjct 669114 CTGGCTGAAGCGCTCGACCAGGTTCTCGTTAACGATGCCATCGGAGGCGGCGAAGAAGGC 669173 Query 160351 CAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCTCTTTTCCCAGTGTGTCAC 160410 || |||||| |||||||| || | |||||| | || || | | ||||| |||| Sbjct 669174 CAGCACGTGCGAGATGAAGTGGCGCTCGTCGTCCTTCAGGC---GGTGCCAGTCGGTCAG 669230 Query 160411 GTCTTGGGCCAAATCAACCTCTTCCGCGCTCCA 160443 ||| | || | ||| ||||| ||| || |||| Sbjct 669231 GTCCTTGGAGAGATCCACCTCCTCCACGGTCCA 669263 >seq5396 Length=9561034 Score = 122 bits (134), Expect = 1e-22 Identities = 322/492 (65%), Gaps = 0/492 (0%) Strand=Plus/Plus Query 203838 TCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGC 203897 |||| ||||| ||||||||||||||||| | || ||| | | | ||| |||||||| | Sbjct 8233757 TCTTATCCACGGTGAACTGAATGGCGTTTGCAGCTGGCTTTGTGCGCAGGTAGTACATTC 8233816 Query 203898 CGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGG 203957 | || || || || | ||| || | ||| ||||| | ||||| | ||| | Sbjct 8233817 CAGTTTTGAGACCAGCTTTCCAGGAATAGAAGTGTATGGACGTGAGTTTTCCATAGTTTG 8233876 Query 203958 GGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGG 204017 | || |||| |||||||| | ||||| || || || ||||| | | |||||||||| Sbjct 8233877 GCTCTGCCACATGAATGTTGAACGACTGACTCTGATCTATGAACGCTCCTCGATCTGCGG 8233936 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTGGTGT 204077 |||| || || | | |||| || || |||||||| || ||| ||| || | | | Sbjct 8233937 CCATCTTAATGGTCGACTTCACTGAGATTTCCCACACTGTTTTGTACAGATCGCGGACCT 8233996 Query 204078 GTTGAGGCACATCTTCCCACGTCCTGATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCG 204137 || || | | || || ||| ||||| || || || | | || || Sbjct 8233997 TCTGGGGGATGGCCTCAATATTCTGGATTGAGCCCCTGCTGGAAATGATTTGGTTCTTCA 8234056 Query 204138 TCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 | || || |||||| | ||| | | || |||| | || || |||| | | | Sbjct 8234057 TGTCGTCGTCCCACAAGTCCAGCTCCGTTAGGTCCCTTAACAAATGATGGTTAACCACTT 8234116 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 | || || || ||||| || | | ||| | | || | ||| | || ||||| | | Sbjct 8234117 GGAATTCGCCAGACAGAACTCGCCTGGTATAAATATTCGTTGTGTACGGCTCGAAAGATT 8234176 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 |||||||||| | ||| || || ||| || |||||||| || || | | |||||||| Sbjct 8234177 CGTTGTTGCCCATAATTTGGGCAGTGGACGCAGTGGGCATAGGCGCAACCAACAGGGAGT 8234236 Query 204318 TGCGCACACCGT 204329 | || ||||||| Sbjct 8234237 TCCGGACACCGT 8234248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795100304472880