Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04] 5,523 sequences; 169,378,599 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq5238 147 5e-30 seq5396 136 9e-27 seq5402 134 3e-26 seq5395 134 3e-26 >seq5238 Length=3592495 Score = 147 bits (162), Expect = 5e-30 Identities = 158/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || |||||||| ||||||||||| |||| ||||||||| | || || | || || Sbjct 2679445 AGCACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCC 2679386 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||| ||||||||||| ||||||||||| || || || || || ||| Sbjct 2679385 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 2679326 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| |||| |||||| | | || || ||||| ||||| ||| Sbjct 2679325 TGGATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTC 2679266 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| |||||||| || ||||| Sbjct 2679265 TTGCCGGTGAGGGTTTTCACGAAGATTTG 2679237 >seq5396 Length=9561034 Score = 136 bits (150), Expect = 9e-27 Identities = 161/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | ||| || | ||| | ||| |||||||| || | ||| ||||||| | || Sbjct 8331071 CGCAGACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTG 8331012 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||||||||||||||| || |||||||| ||||||||||| || ||| ||||||| Sbjct 8331011 CGGCCATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCT 8330952 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 ||| ||||||||||| || || ||||| || || | | ||| || || | | Sbjct 8330951 TCTTTGTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGC 8330892 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| |||||||| || || || || || || Sbjct 8330891 GTGATGGTCTTGCCCGTGAGGGTCTTAACGAAGATCTG 8330854 >seq5402 Length=10656099 Score = 134 bits (148), Expect = 3e-26 Identities = 146/194 (75%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 199433 GTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCG 199492 ||||||||||| |||| |||||| |||| | ||| | ||| || || |||||||| ||| Sbjct 571441 GTCGACTCCTTCTGGATGTTGTAATCAGAAAGAGTGCGTCCGTCCTCGAGCTGCTTGCCG 571500 Query 199493 GCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTC 199552 |||||||| ||||||||||| || || |||||| || ||||| ||||| |||| Sbjct 571501 GCGAAGATCAGACGCTGCTGATCTGGGGGAATTCCCTCCTTGTCCTGGATCTTGGCCTTC 571560 Query 199553 ACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTT 199612 ||| |||| |||||| | || || || |||| ||||| ||||| || || | ||| Sbjct 571561 ACGTTCTCGATGGTGTCAGATGGCTCCACCTCCAGGGTGATGGTCTTGCCGGTCAAAGTC 571620 Query 199613 TTCACAAAAATTTG 199626 || ||||| || || Sbjct 571621 TTGACAAAGATCTG 571634 Score = 122 bits (134), Expect = 2e-22 Identities = 158/218 (72%), Gaps = 3/218 (1%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || ||||||||||| |||| ||||||||| | || || | ||| || Sbjct 571654 AGGACCAAGTGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCC 571713 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||| ||||| ||||||||||| ||||||||||| || || || || || ||| Sbjct 571714 TCCAGTTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCC 571773 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| |||||| || | ||||| | | || || ||||| || || ||| Sbjct 571774 TGGATCTTGGCCTTCACATTCTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGTC 571833 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTGGTACATTTT 199635 ||||| || | || |||||||| || || |||||| Sbjct 571834 TTACCAGTCAAGGTCTTCACAAAGATCTG---CATTTT 571868 >seq5395 Length=2659632 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| |||| ||||||||| | || || | ||| || Sbjct 975546 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCC 975605 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| |||||||||||||| || ||||| || ||| Sbjct 975606 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 975665 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| |||| ||| || | | || || || | ||||| ||| Sbjct 975666 TGGATCTTGGCCTTCACGTTCTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTC 975725 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| || || || Sbjct 975726 TTGCCAGTCAGGGTCTTCACGAAGATCTG 975754 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | |||||| || |||||||| |||| |||||| || | || || | ||| || Sbjct 975774 AGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCC 975833 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 ||||||||||||||||||||||| |||||||||||||| || ||||| || ||| Sbjct 975834 TCCAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCC 975893 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| || |||| |||||| | | || || || | ||||| ||| Sbjct 975894 TGGATCTTGGCCTTAACATTCTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTC 975953 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || ||||| |||||||| Sbjct 975954 TTGCCAGTCAGGGTCTTCACGAAAATTTG 975982 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178838175455041