Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Drosophila_20biarmipes_20[refseq_20GCF_5F000233415.1_202013-03-04]
5,523 sequences; 169,378,599 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq5402 140 4e-28
seq5238 140 4e-28
seq5395 123 3e-23
seq5396 104 3e-17
>seq5402
Length=10656099
Score = 140 bits (154), Expect = 4e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426
|| |||| | ||| | |||| |||||| || |||||| ||||| ||||| || ||
Sbjct 571411 CCACCTCGCAGACGGAGAACCAAATGCAAGGTCGACTCCTTCTGGATGTTGTAATCAGAA 571470
Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486
|||||||| |||| |||||||||||||||||||| |||| |||||||| || | ||
Sbjct 571471 AGAGTGCGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGA 571530
Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546
| | |||||||||| |||||| ||| | || | | ||||| | |||||
Sbjct 571531 ATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTTCTCGATGGTGTCAGATGGCTCCACC 571590
Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|||| |||||||| ||||| |||| || || |||||||| |||||
Sbjct 571591 TCCAGGGTGATGGTCTTGCCGGTCAAAGTCTTGACAAAGATCTGCAT 571637
Score = 132 bits (146), Expect = 5e-26
Identities = 147/196 (75%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || || || |||| || || ||||||||||||||
Sbjct 571674 CTCCTTCTGGATGTTGTAGTCGGACAGGGTACGTCCGTCCTCCAGTTGCTTGCCGGCGAA 571733
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| |||||||| || | || | || |||||||||| |||||| ||| | |
Sbjct 571734 GATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATT 571793
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | ||||||| | ||||| |||| || ||||| || || |||| || || ||
Sbjct 571794 CTCAATCGTGTCGGAGGGCTCCACCTCCAAGGTAATGGTCTTACCAGTCAAGGTCTTCAC 571853
Query 46582 AAAGATTTGCATTTTG 46597
|||||| |||||||||
Sbjct 571854 AAAGATCTGCATTTTG 571869
>seq5238
Length=3592495
Score = 140 bits (154), Expect = 4e-28
Identities = 157/210 (75%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443
|||||| || | || |||||| ||||| ||||||||||| || ||||| |||| ||
Sbjct 2679443 CACCAGGTGGAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCGTCCTC 2679384
Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503
||||||||||||||||| |||| |||||||| || | || | || ||||||||||
Sbjct 2679383 CAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGGATGCCCTCCTTGTCCTG 2679324
Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563
|||||| ||| | || | | ||||| | ||||| |||| |||||||| ||
Sbjct 2679323 GATCTTGGCCTTCACATTCTCGATGGTGTCCGAAGGCTCCACCTCCAAGGTGATGGTCTT 2679264
Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
||| || || ||||| || |||||||||||
Sbjct 2679263 GCCGGTGAGGGTTTTCACGAAGATTTGCAT 2679234
>seq5395
Length=2659632
Score = 123 bits (136), Expect = 3e-23
Identities = 145/196 (74%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||| ||||| || ||||| |||| || |||||||| ||||||||
Sbjct 975794 CTCCTTCTGGATGTTGTAATCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 975853
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | | |||||||||| |||||| ||| | |
Sbjct 975854 GATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTAACATT 975913
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | |||||| | || || || | |||||||| ||||| ||||| || || ||
Sbjct 975914 CTCGATGGTGTCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 975973
Query 46582 AAAGATTTGCATTTTG 46597
|| |||||||| |||
Sbjct 975974 GAAAATTTGCATGTTG 975989
Score = 122 bits (134), Expect = 1e-22
Identities = 142/192 (74%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461
|||||| ||||| ||||||||||| || ||||| |||| || |||||||| ||||||||
Sbjct 975566 CTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGTCCGTCCTCCAGCTGCTTTCCGGCGAA 975625
Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521
|||| ||||||||||| | || | | |||||||||| |||||| ||| | |
Sbjct 975626 GATCAGACGCTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTCACGTT 975685
Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581
| | | || ||| | || || || | |||||||| ||||| ||||| || || ||
Sbjct 975686 CTCGATGGTATCGGAGGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTCAGGGTCTTCAC 975745
Query 46582 AAAGATTTGCAT 46593
||||| |||||
Sbjct 975746 GAAGATCTGCAT 975757
>seq5396
Length=9561034
Score = 104 bits (114), Expect = 3e-17
Identities = 155/220 (70%), Gaps = 0/220 (0%)
Strand=Plus/Minus
Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437
||||| ||||| ||||| || |||||| || || || ||||| || || ||||| |
Sbjct 8331066 ACGCAGCACCAAGTGCAAAGTGGACTCCTTCTGAATGTTATAGTCAGAGAGGGTGCGGCC 8331007
Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497
|| || ||||||||||| ||||| |||| |||||||| || | || | | || ||
Sbjct 8331006 ATCTTCCAGCTGCTTGCCAGCGAAGATCAGACGCTGCTGATCTGGAGGAATTCCTTCTTT 8330947
Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557
|||| ||||| |||| | | | || || | ||| || || | ||||||
Sbjct 8330946 GTCCTGAATCTTGGCTTTGACATTTTCGATAGTATCCGAAGGTTCGACCTCAAGCGTGAT 8330887
Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTTG 46597
||| |||||||| || || ||||| ||||| ||||| |||
Sbjct 8330886 GGTCTTGCCCGTGAGGGTCTTAACGAAGATCTGCATCTTG 8330847
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565199377353960
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |